PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa04g057760.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 373aa MW: 41349.1 Da PI: 7.6396 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.7 | 1.8e-12 | 304 | 349 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + +++L +Av+YIk+Lq Csa04g057760.1 304 SIAERVRRTRISERMRKLQELVPNM----DKQTNTSDMLDLAVDYIKDLQ 349 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.9 | 298 | 348 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-15 | 301 | 362 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.43E-11 | 302 | 351 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.5E-13 | 303 | 359 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.9E-12 | 304 | 354 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-9 | 304 | 349 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MDSSNHLYDP NHISSSSSGL GGGLLRFRSA PSSVLASFVD QDKSGFDDSS DRLLSRFVTS 60 DGVNEDLGVS LKFEDNKSPV SLTNNTSVSY AAATLPPPQP EPSSFLGLPP HYPRQSKGMM 120 NSIGLDQFLG MNNHHHTKPV ESNLLRQSSS PAGMFTNLSD QNGYGPMRNL INYEEDEVSP 180 SNSNGLRRHC SISSRPPSSL GMLSQIPEIS PETSFQYSHW NDPSNFIDNL SSLKRETDDD 240 GKLFLGAQNG DSGNRMQLLS HHLSLPKSSS TASDMVSVDK YLQLQDSVPC KIRAKRGCAT 300 HPRSIAERVR RTRISERMRK LQELVPNMDK QTNTSDMLDL AVDYIKDLQR QYKILYENRA 360 NCKCMNKEKK SI* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00308 | DAP | Transfer from AT2G42280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa04g057760.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK228981 | 0.0 | AK228981.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor, complete cds, clone: RAFL16-28-L05. | |||
GenBank | BT015339 | 0.0 | BT015339.1 Arabidopsis thaliana At2g42280 gene, complete cds. | |||
GenBank | BT015712 | 0.0 | BT015712.1 Arabidopsis thaliana At2g42280 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010506041.1 | 0.0 | PREDICTED: transcription factor bHLH130-like isoform X2 | ||||
Swissprot | Q66GR3 | 0.0 | BH130_ARATH; Transcription factor bHLH130 | ||||
TrEMBL | D7LI37 | 0.0 | D7LI37_ARALL; Basic helix-loop-helix family protein | ||||
STRING | XP_010506040.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6293 | 27 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
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