PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa04g055550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 257aa MW: 28159.1 Da PI: 7.9159 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.8 | 1.3e-10 | 71 | 117 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+ErrRR+riNs +++Lr +l + K +Ka+ L k+v+ +k+L Csa04g055550.1 71 RNHKEAERRRRERINSHLNKLRNILSCN-----SKTDKATLLAKVVQRVKEL 117 58***********************997.....7************999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.577 | 68 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.26E-12 | 71 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.5E-12 | 71 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.4E-8 | 71 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.8E-9 | 74 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MQPESSDQML YSFLAGNEIG GGGGGYCVSG DYMTTMQSLC GSSSSTSSYY PLAISGIGET 60 MAQDRALAAL RNHKEAERRR RERINSHLNK LRNILSCNSK TDKATLLAKV VQRVKELKQQ 120 TLEISDSDQT LLPSETDEIS VLHFGDYSND GHIIFKASLC CDDRSDLLPD LMEILKSLNM 180 KTLRAEMVTL GGRTRSVLVV AADKEMHGVE SVHFLQNALK SLLERLSKSL MERSSGGGGG 240 GERSKRRRAL DHIIMV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 76 | 81 | ERRRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa04g055550.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK119059 | 0.0 | AK119059.1 Arabidopsis thaliana At2g41130 mRNA for putative bHLH transcription factor (bHLH106), complete cds, clone: RAFL21-40-D23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010505877.1 | 0.0 | PREDICTED: transcription factor bHLH106-like | ||||
Swissprot | O80674 | 1e-153 | BH106_ARATH; Transcription factor bHLH106 | ||||
TrEMBL | A0A1J3GMC5 | 1e-162 | A0A1J3GMC5_NOCCA; Uncharacterized protein | ||||
STRING | XP_010505877.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3642 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41130.1 | 1e-140 | bHLH family protein |
Publications ? help Back to Top | |||
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