PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa04g054570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | G2-like | ||||||||
Protein Properties | Length: 406aa MW: 45540.1 Da PI: 7.2829 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.7 | 9.5e-32 | 86 | 139 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH +F++ave+LGG+++AtPk +l+lm+vkgL+++hvkSHLQ+YR+ Csa04g054570.1 86 PRLRWTPELHICFLQAVERLGGPDRATPKLVLQLMNVKGLSIAHVKSHLQMYRS 139 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.117 | 82 | 142 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-30 | 82 | 140 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.84E-16 | 83 | 141 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.8E-24 | 86 | 141 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.2E-9 | 87 | 138 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence Send to blast |
MRSSSKSSEN SKTCLSNNFK ATTNIEEDKD EEEDEEGEED EEERSGDQSP SSNSYVEESG 60 SHQNHHHDQI KKNGGSVRPY NRSKTPRLRW TPELHICFLQ AVERLGGPDR ATPKLVLQLM 120 NVKGLSIAHV KSHLQMYRSK KTDDPNQGDQ GFSFEHGAGY TYNLSQLPML QSFDQRPSSS 180 LGYGSGSWTD HRRQIYRSPW RGLTARDTTR TRQTLFSPRP GERVHGVSNS ILNDKNKTIS 240 FRINSHEAGS EHNGVAEVVP RIHRSFVEGM KTFNKSWGQS LSSNPNPSTA TRPQNHIATT 300 LNSYQWENSQ VAERSENVLK RKRVLLSDDC NKSNQDLDLS LSLKAPRTHD NLGECLLEDD 360 HQDSLQGLSL SLSSSGLSKL GQTIRKEDQT ERKIAVLASP LDLTL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 3e-17 | 87 | 141 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-17 | 87 | 141 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-17 | 87 | 141 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-17 | 87 | 141 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa04g054570.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC254595 | 0.0 | AC254595.1 Capsella rubella clone CAP16-M18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010505750.1 | 0.0 | PREDICTED: putative two-component response regulator-like APRR6 | ||||
TrEMBL | R0FW67 | 0.0 | R0FW67_9BRAS; Uncharacterized protein | ||||
STRING | XP_010505750.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9359 | 21 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40260.1 | 0.0 | G2-like family protein |