PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa04g054520.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 255aa MW: 28237.4 Da PI: 5.035

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa04g054520.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39	1.4e-12	64	110	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h +E+rRRdriNs + Lr+l+P++ Kl+Ka+ L ++e +k+L Csa04g054520.1 64 RSHRLAEKRRRDRINSHLTALRKLVPNS-----DKLDKAALLATVIEQVKEL 110 68***********************8.....7***********99988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.53E-14	60	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.231	61	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.6E-14	64	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.58E-12	64	113	No hit	No description
Pfam	PF00010	3.2E-10	64	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.7E-12	67	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	3.7E-4	152	216	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MENSYDDSAK WSDSTTPYMV SWSFQSDSSD SDWSRFNLGF SSSSGNFPAD DCVGAIDKAE 60 SLSRSHRLAE KRRRDRINSH LTALRKLVPN SDKLDKAALL ATVIEQVKEL KQQAAESTIF 120 QDLPTEADEV TVQPETISDF ESNTETIIFK ASFCCEDQPE AISEIITVLT KLQLETIQAE 180 IISVGGRMRI NFILKDSNTK ETTNVAASAK DLKQSLCGAL NRITSSSSSS STSSVCRIRS 240 KRQRWFLSSH DSQL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa04g054520.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by salicylic acid (SA) treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493583	0.0	AB493583.1 Arabidopsis thaliana At2g40200 mRNA for hypothetical protein, partial cds, clone: RAAt2g40200.
GenBank	AF488586	0.0	AF488586.1 Arabidopsis thaliana clone bHLH051 putative bHLH transcription factor mRNA, complete cds.
GenBank	BT029997	0.0	BT029997.1 Arabidopsis thaliana At2g40200 mRNA, complete cds.
GenBank	BT030051	0.0	BT030051.1 Arabidopsis thaliana At2g40200 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010505745.1	0.0	PREDICTED: transcription factor bHLH51-like
Swissprot	Q9XEF0	1e-159	BH051_ARATH; Transcription factor bHLH51
TrEMBL	A0A384L9H1	1e-156	A0A384L9H1_ARATH; Uncharacterized protein
TrEMBL	C0SV80	1e-156	C0SV80_ARATH; Uncharacterized protein At2g40200 (Fragment)
STRING	XP_010505745.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6806	25	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40200.1	1e-146	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]