PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g054400.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 613aa    MW: 67534.2 Da    PI: 7.2208
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g054400.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.74.1e-08266286526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ f++ G C+ Gd+C +aHg
  Csa04g054400.1 266 PCPEFRK-GSCPKGDSCEYAHG 286
                     8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.209.9E-1567186IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.58E-1378163IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.07983192IPR020683Ankyrin repeat-containing domain
SMARTSM002480.001783113IPR002110Ankyrin repeat
PfamPF136377.8E-984136No hitNo description
CDDcd002047.31E-1285181No hitNo description
SMARTSM002484118150IPR002110Ankyrin repeat
PROSITE profilePS5010313.976261288IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-5261287IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-5266287IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-5266286IPR000571Zinc finger, CCCH-type
SMARTSM0035637296319IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.465296320IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MCGAKSNLCS SKTLTEVEFM RQKSEEEATT ITAAAPAMSL LEFAACDDLS SFKREIEEKP  60
SVEIDEAGLW YCRRVGLKKM GFEERTPLMV AAMYGSMEVL SYIIATGRSD VNRVCSDEKV  120
TALHCAVSGC SVSIVEIIKI LLDASASPNC VDANGNKPVD LLVKASRFVP NQSRKAVEVL  180
LTGSFDGLMG DEEEEVKSVV TKYPADASLP DINEGVYGTD EFRMFSFKVK PCSRAYSHDW  240
TECPFVHPGE NARRRDPRKY PYTCVPCPEF RKGSCPKGDS CEYAHGVFES WLHPAQYRTR  300
LCKDETGCAR RVCFFAHRRD ELRPVNASTG SAMVSPRSSN QSPEMPVMSP LALGSSPMNS  360
PMASGGVPLS PRNGGLWQNR VNSLTPPPLQ LNGSRLKSTL SARDMDMEME LRFRGLDNRR  420
LGDLKPSNLE ETFGSYDSSA VMQLQSPSRH SQMNHYHPSS PVRQPPTHGF ESSAAMAAAV  480
MNARTSAFAK RSLSFKPAPV AASNVSDWGS PNGKLEWGMQ REELNKLRRS ASFGIHGNNN  540
NNNCVSRPAR DYSDEPDVSW VNSLVKENAP ERAFGLNERV GNTVNGAAGR DKFKLPSWAE  600
QMYIDHEQQI VA*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g054400.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545950.0AC254595.1 Capsella rubella clone CAP16-M18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010505737.10.0PREDICTED: zinc finger CCCH domain-containing protein 29-like
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLR0HRW60.0R0HRW6_9BRAS; Uncharacterized protein
STRINGXP_010505737.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein