PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g054040.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 389aa    MW: 42991.7 Da    PI: 7.8751
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g054040.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.7e-175398147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++e de l ++v++ G+++W++I+r ++ gR++k+c++rw + 
   Csa04g054040.1 53 KGPWSPEQDEALTRLVTKCGPRNWTLISRGIP-GRSGKSCRLRWCNQ 98
                     79******************************.***********985 PP
2Myb_DNA-binding50.35.4e-16105148146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++++ eEd  ++ a++ +G++ W+ Ia+ ++ gRt++ +k++w++
   Csa04g054040.1 105 KKPFSDEEDRMIISAHAVHGNK-WAVIAKLLP-GRTDNAIKNHWNS 148
                      689*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.3134899IPR017930Myb domain
SuperFamilySSF466892.08E-3050146IPR009057Homeodomain-like
SMARTSM007172.4E-1452101IPR001005SANT/Myb domain
PfamPF002491.7E-155398IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2354106IPR009057Homeodomain-like
CDDcd001671.35E-135597No hitNo description
PROSITE profilePS5129424.176100154IPR017930Myb domain
SMARTSM007178.4E-16104152IPR001005SANT/Myb domain
PfamPF002491.5E-14105148IPR001005SANT/Myb domain
CDDcd001674.63E-12107147No hitNo description
Gene3DG3DSA:1.10.10.609.6E-24107153IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MNAATYQPPE LMLSVNLPTG CDGTEDAINA AVEEELAELA KSDSHGGGRS KVKGPWSPEQ  60
DEALTRLVTK CGPRNWTLIS RGIPGRSGKS CRLRWCNQLD PCLKKKPFSD EEDRMIISAH  120
AVHGNKWAVI AKLLPGRTDN AIKNHWNSAL RRKPAGLWMD HHHQGMSNTE IYQMQPSKVR  180
KISNASPREH LPREETNSFT PPVLLNDAKM DDVANEPPCE KVKSKPDVYR PVARMGAFSV  240
CKQGYMNHHM APCEGPLVQA SRPGSLAAKF LQSLCYEPIV PSKCGRGCCN HPDNKTLPSL  300
SKSVLGPEFV DYEEHSSAEL DQELISISTD LNNIAWIQSG FNNNNYLKEA EQSLKADDQF  360
HRAKFTGMVN NGVSVSSQML RPDVRALS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-38521533104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for male gametophyte (pollen) development. {ECO:0000269|PubMed:22101548}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g054040.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: May be the target of the microRNA (miRNA) MIR393a. {ECO:0000269|PubMed:15258262}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010505683.10.0PREDICTED: uncharacterized protein LOC104782447
SwissprotO041920.0MYB25_ARATH; Transcription factor MYB25
TrEMBLR0HPT00.0R0HPT0_9BRAS; Uncharacterized protein
STRINGXP_010505683.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56382747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G39880.11e-176myb domain protein 25
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]