PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa04g051770.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB | ||||||||
Protein Properties | Length: 302aa MW: 33415.9 Da PI: 5.0648 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.3 | 8.2e-09 | 28 | 73 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 +WT+eE +++ +a + + ++ +W ++a +++ g+t +++ ++ Csa04g051770.1 28 KWTAEENKKFENALAFYDKDtpdRWVKVADMLP-GKTVGDVIKQYRE 73 8********************************.******9999986 PP | |||||||
2 | Myb_DNA-binding | 48.5 | 1.9e-15 | 145 | 189 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + k++G+g+W+ Iar + ++Rt+ q+ s+ qky Csa04g051770.1 145 PWTEEEHRQFLMGLKKYGKGDWRNIARNFVTTRTPTQVASHAQKY 189 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-4 | 23 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 9.71 | 24 | 79 | IPR017884 | SANT domain |
SMART | SM00717 | 1.5E-10 | 25 | 77 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 9.33E-12 | 27 | 81 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.05E-8 | 28 | 74 | No hit | No description |
Pfam | PF00249 | 4.5E-7 | 28 | 73 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 21.845 | 138 | 194 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.73E-17 | 140 | 193 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.7E-18 | 141 | 193 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 8.7E-14 | 142 | 192 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-13 | 142 | 189 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.15E-11 | 145 | 190 | No hit | No description |
Pfam | PF00249 | 7.9E-13 | 145 | 189 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MNRGIEVMSP ATYLETSNWL FQENRGTKWT AEENKKFENA LAFYDKDTPD RWVKVADMLP 60 GKTVGDVIKQ YRELEEDVSD IEAGLIPIPG YASDSFTLDW GGYDGAAAAG NNGFNMNGYY 120 FSATAGGKRG SAARTAEHER KKGVPWTEEE HRQFLMGLKK YGKGDWRNIA RNFVTTRTPT 180 QVASHAQKYF IRQVNGGKDK RRSSIHDITT VNIPDSPDAA ATDNVTANAP CSPPSVGGSQ 240 QEASEWDGQP LYDETAAAFY NQNGFQETLL GMSSTPYMAK LQEQSFLNAS QFGSYNAYLQ 300 M* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 5e-17 | 26 | 93 | 8 | 75 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa04g051770.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK118135 | 0.0 | AK118135.1 Arabidopsis thaliana At2g38090 mRNA for putative MYB family transcription factor, complete cds, clone: RAFL19-43-J04. | |||
GenBank | AY519529 | 0.0 | AY519529.1 Arabidopsis thaliana MYB transcription factor (At2g38090) mRNA, complete cds. | |||
GenBank | BT006122 | 0.0 | BT006122.1 Arabidopsis thaliana clone U50930 putative MYB family transcription factor (At2g38090) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010505420.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 3e-97 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | R0FXY9 | 0.0 | R0FXY9_9BRAS; Uncharacterized protein | ||||
STRING | XP_010505420.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1228 | 27 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 0.0 | MYB family protein |
Publications ? help Back to Top | |||
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