PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa04g051280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GRAS | ||||||||
Protein Properties | Length: 856aa MW: 96417.1 Da PI: 5.8005 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 310.2 | 4.8e-95 | 351 | 651 | 1 | 305 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lL++cA+av+++d ++a +lL++++++++p gd +qRla++f+++L+arla+++s++yk + +++ s + +l+a++lf ++P+ k+s+ Csa04g051280.1 351 LRSLLIHCAQAVAADDRRCAGQLLKQIRQHSTPFGDGNQRLAHCFANGLEARLAGTGSQIYKGIVSKPRS---AAAVLKAHQLFLACCPFRKLSY 442 689***************************************************************9999...999******************* PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 +++N++I + v++++rvH+iDf+i +G+QWp+L++ ++ g+p++RiTg++ p++g ++++eetg+rLa +A+++gvpfe+++ +ak++++ Csa04g051280.1 443 FITNKTIRDLVDNSQRVHVIDFGILYGFQWPTLIHRFSM--YGSPKVRITGIEFPQPGfrPAQRVEETGQRLAAYAKHFGVPFEYKA-IAKKWDA 534 **************************************9..8***************9*****************************.7****** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 ++le+L+++++E+++Vn+ ++ ++l+desv++es+rd+vL+l+ +++P+++v+ + +n++ F++rf eal ++s++fd+le+ +pre+e ri Csa04g051280.1 535 IQLEDLDIDRDEVIIVNCLYRAENLHDESVKVESCRDTVLNLIGKINPDLFVFGIVNGAYNAPFFVTRFREALFHFSSIFDMLETIVPREDEGRI 629 *********************************************************************************************** PP GRAS 284 kvErellgreivnvvacegaer 305 ++E e++gre+ nv+aceg er Csa04g051280.1 630 FLEMEVFGREALNVIACEGWER 651 ********************98 PP | |||||||
2 | GRAS | 183.8 | 1.2e-56 | 653 | 850 | 176 | 374 |
GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270 fe+++ +ak++++++le+L+++++E+++Vn+ ++ ++l+desv++es+rd+vL+l+ +++P+++v+ + +n++ F++rf eal ++s++fd+ Csa04g051280.1 653 FEYKA-IAKKWDAIQLEDLDIDRDEVIIVNCLYRAENLHDESVKVESCRDTVLNLIGKINPDLFVFGIVNGAYNAPFFVTRFREALFHFSSIFDM 746 9****.7**************************************************************************************** PP GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365 le+ +pre+e r+++E e++gre+ nv+aceg er+er et+++W+ r +++G+ +vp++ +++k+a + +++++ + + +++++ +l++gWk+r Csa04g051280.1 747 LETIVPREDEGRMFLEMEVFGREALNVIACEGWERVERPETYKQWHVRAMRSGLVQVPFDPSIMKTALHKVNTFYHKDFVIDQDNRWLLQGWKGR 841 ***************************************************************************889***************** PP GRAS 366 pLvsvSaWr 374 +++++S+W+ Csa04g051280.1 842 TVMALSVWK 850 ********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 59.462 | 325 | 830 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.7E-92 | 351 | 651 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.2E-54 | 653 | 850 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 856 aa Download sequence Send to blast |
MITEPGLTGI SAAITRNRLP GLPDQSTSLL PNHTFTPVSL YDSFNYNLSS SDHRNPPENS 60 VFVREVVVGE EEDPADDFDF SDAVLGYISQ MLNEEDMDDK VCMLQESLDL EAAERSLYEA 120 IGKKYPPSPE RNLVASFAER NGENLDRVVP GNYTAGDCIG FGNGVIKPMS GGFTIDFRNP 180 QSRCSSVLSV PQSNGFGMDQ SSKKSLYSDS NGESHQSVWL FRGGIEEASR FLPEQNELIV 240 NFREESCMSR GRKNSSRDEV CVEEERSSKL PAVFGEDILR SDVVDKILVH VPGEESMKEF 300 DALREVLKKG VEKKKASVAQ GGKRRARGRG RGRGGGGGGG GQNGKKEVVD LRSLLIHCAQ 360 AVAADDRRCA GQLLKQIRQH STPFGDGNQR LAHCFANGLE ARLAGTGSQI YKGIVSKPRS 420 AAAVLKAHQL FLACCPFRKL SYFITNKTIR DLVDNSQRVH VIDFGILYGF QWPTLIHRFS 480 MYGSPKVRIT GIEFPQPGFR PAQRVEETGQ RLAAYAKHFG VPFEYKAIAK KWDAIQLEDL 540 DIDRDEVIIV NCLYRAENLH DESVKVESCR DTVLNLIGKI NPDLFVFGIV NGAYNAPFFV 600 TRFREALFHF SSIFDMLETI VPREDEGRIF LEMEVFGREA LNVIACEGWE RXFEYKAIAK 660 KWDAIQLEDL DIDRDEVIIV NCLYRAENLH DESVKVESCR DTVLNLIGKI NPDLFVFGIV 720 NGAYNAPFFV TRFREALFHF SSIFDMLETI VPREDEGRMF LEMEVFGREA LNVIACEGWE 780 RVERPETYKQ WHVRAMRSGL VQVPFDPSIM KTALHKVNTF YHKDFVIDQD NRWLLQGWKG 840 RTVMALSVWK PESKA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 5e-38 | 357 | 656 | 25 | 316 | Protein SCARECROW |
5b3h_A | 4e-38 | 357 | 656 | 24 | 315 | Protein SCARECROW |
5b3h_D | 4e-38 | 357 | 656 | 24 | 315 | Protein SCARECROW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 324 | 333 | RARGRGRGRG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa04g051280.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC004684 | 0.0 | AC004684.3 Arabidopsis thaliana chromosome 2 clone F13M22 map ve018, complete sequence. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010505361.1 | 0.0 | PREDICTED: scarecrow-like protein 9 isoform X1 | ||||
Swissprot | O80933 | 0.0 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | R0HVC0 | 0.0 | R0HVC0_9BRAS; Uncharacterized protein | ||||
STRING | XP_010505361.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM358 | 27 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 0.0 | GRAS family protein |