PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa04g051210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | Dof | ||||||||
Protein Properties | Length: 323aa MW: 34663.8 Da PI: 9.1018 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.1 | 4.5e-39 | 78 | 137 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+alkcprC+stntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+n++s+ Csa04g051210.1 78 EAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNRRSK 137 6789*****************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-36 | 61 | 130 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.1E-32 | 80 | 135 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.478 | 81 | 135 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 83 | 119 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MVFSSIQAYL DSSNWQQAPP SNYNQDGAGA SATGGHVLRP QLQQQQQQPQ SNGSGGCGSI 60 RAGSMVDRAR QANVALPEAA LKCPRCESTN TKFCYFNNYS LTQPRHFCKT CRRYWTRGGA 120 LRNVPVGGGC RRNRRSKSSS NNNNNSTATS NNNSFSSGNA STISSILSSH YGGNQESILS 180 QILSPGRLMN PTYNHLGDLA NNTKTDNNMS LLNYGGLSQD LRSIHMGTSG GSLMSCVDEW 240 RSTSHHQQPS LGGGNLDDSS NPNPSSNGFY PFESPRITSA SISSALASQF SSVKVEDNPY 300 KWVNVNGNCS SWTDLSAFGS SR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 121 | 134 | RNVPVGGGCRRNRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Probably involved in early processes for vascular development (PubMed:17583520). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements. Triggers the transcription of HD-ZIP III genes, especially in the central domain of vascular tissue (PubMed:30626969). {ECO:0000250|UniProtKB:Q9M2U1, ECO:0000269|PubMed:17583520, ECO:0000269|PubMed:30626969}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa04g051210.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cytokinin in procambium. Antagonized by the HD-ZIP III proteins and by mobile miR165 and miR166 microRNAs. {ECO:0000269|PubMed:30626969}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC004684 | 0.0 | AC004684.3 Arabidopsis thaliana chromosome 2 clone F13M22 map ve018, complete sequence. | |||
GenBank | BT030014 | 0.0 | BT030014.1 Arabidopsis thaliana At2g37590 mRNA, complete cds. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010505351.1 | 0.0 | PREDICTED: dof zinc finger protein DOF2.4 | ||||
Swissprot | O80928 | 0.0 | DOF24_ARATH; Dof zinc finger protein DOF2.4 | ||||
TrEMBL | D7LJV7 | 0.0 | D7LJV7_ARALL; Dof-type zinc finger domain-containing protein | ||||
STRING | XP_010505351.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11354 | 17 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37590.1 | 1e-161 | DNA binding with one finger 2.4 |
Publications ? help Back to Top | |||
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