PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g051000.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 183aa    MW: 20721.1 Da    PI: 10.2709
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g051000.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.000624971123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C+++Fs+   L  H  +H
  Csa04g051000.1 49 FECKTCNRRFSSFQALGGHRASH 71
                    89**********99999998887 PP
2zf-C2H216.52.4e-0598120123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg+sF +   L  H+r+H
  Csa04g051000.1  98 HECSICGQSFGTGQALGGHMRRH 120
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.1E-124873IPR007087Zinc finger, C2H2
SuperFamilySSF576677.28E-748120No hitNo description
SMARTSM003550.164971IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.3464976IPR007087Zinc finger, C2H2
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
SMARTSM003550.009798120IPR015880Zinc finger, C2H2-like
PfamPF139126.1E-1298122IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.51298125IPR007087Zinc finger, C2H2
PROSITE patternPS000280100120IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MKRERSEFEE SIKSLDIAKC LMILAQTSMV KQIGLNQNQH TESHMSNRFE CKTCNRRFSS  60
FQALGGHRAS HKKPKLTTVE QKEVKHLSNN YKGNNHLHEC SICGQSFGTG QALGGHMRRH  120
RSSMKVQPAF ICPVVPTMPV LKRCSSSKRV LSLDLNLTPL ENDLEYIFGK TFVPKIDMKF  180
VL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g051000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0058960.0AC005896.3 Arabidopsis thaliana chromosome 2 clone F3G5 map ve018, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBankX986720.0X98672.1 A.thaliana mRNA for ZAT11 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010505329.11e-134PREDICTED: zinc finger protein ZAT11-like
SwissprotQ9SLD41e-114ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLR0HRP31e-116R0HRP3_9BRAS; Uncharacterized protein
STRINGXP_010505329.11e-134(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-116C2H2 family protein