PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g050630.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NF-YB
Protein Properties Length: 106aa    MW: 11669 Da    PI: 7.3508
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g050630.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB83.92e-262524898
           NF-YB 48 seasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegekk 98
                    s asdkcqrekrktingddllwa+atlGfe+y+eplk+yl++yre+eg++k
  Csa04g050630.1  2 SRASDKCQREKRKTINGDDLLWAMATLGFEEYIEPLKLYLMRYREMEGDTK 52
                    579*********************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.0E-18275IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.9E-23273IPR009072Histone-fold
PfamPF008084.3E-5225IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006155.8E-11826No hitNo description
PRINTSPR006155.8E-112745No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MSRASDKCQR EKRKTINGDD LLWAMATLGF EEYIEPLKLY LMRYREMEGD TKGSAKGGDA  60
NAKKDGQSSQ NGQFPQLPNQ GSFSQGPYGN SQAQQHMMVP MSGTD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A5e-182464993NF-YB
4awl_B5e-182465094NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A5e-182465094NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g050630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530831e-104AK353083.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-13-K14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010505265.14e-74PREDICTED: nuclear transcription factor Y subunit B-8-like isoform X3
RefseqXP_019100471.14e-74PREDICTED: nuclear transcription factor Y subunit B-8-like isoform X4
SwissprotQ8VYK43e-60NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A1J3K4I37e-62A0A1J3K4I3_NOCCA; Nuclear transcription factor Y subunit B-8
STRINGXP_010509397.12e-70(Camelina sativa)
STRINGXP_010516951.12e-70(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14802794
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.31e-62nuclear factor Y, subunit B8
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]