PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g050570.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 410aa    MW: 46797 Da    PI: 7.1035
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g050570.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-07295342448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      WT +E   lvd++  +G g W+ I + +    ++Rt+ +++++w+++l
   Csa04g050570.1 295 WTVDEVMTLVDGISHFGVGKWTDIKNNFFhsaTHRTPVDIRDKWRNLL 342
                      **********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.196287346IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-12287349IPR009057Homeodomain-like
SMARTSM007172.3E-7291344IPR001005SANT/Myb domain
CDDcd116604.06E-20293343No hitNo description
SuperFamilySSF466891.22E-16293357IPR009057Homeodomain-like
PfamPF139219.2E-7295349No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MWTFRMDRTP GFPAAGFKCD SVDDNVCHSN EYNKMSDMKR FLMEPTHDNT AVDSFLGLGM  60
ETMGLSSTMD EFSHGFDFSF LPDYGGLYSC TTQDVEAGLK FEILDGFLDE VEEVEGIYAS  120
HDLSSTSNHI LLETQDKKKV SELLDGGPYG LMNFPSESYS PGISGSTGLS EWSKETVPHA  180
EHQNVSSEKL KDSLDSNESE DDKKPLSTFI GSWVKRGRNR KKNLPNTAYR RLDSSGQRMS  240
YDFRPRKDAM KKCMHTSTEN TFRDDHLTSS ESEDDISVTK TSRTRSDRRK HQRMWTVDEV  300
MTLVDGISHF GVGKWTDIKN NFFHSATHRT PVDIRDKWRN LLKASYNDKH NDGEAEERRK  360
SLARPMPKDI LHRVRELASR HPYPFSKSSC FVYDSSRSQS TSKKKKKRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-13280374590Telomere binding protein TBP1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g050570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010505252.10.0PREDICTED: uncharacterized protein LOC104782120 isoform X1
TrEMBLA0A178VNS90.0A0A178VNS9_ARATH; TRFL8
TrEMBLF4IPY70.0F4IPY7_ARATH; TRF-like 8
STRINGXP_010505252.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92001927
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.11e-19TRF-like 3