PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g050490.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 805aa    MW: 89958.9 Da    PI: 8.0074
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g050490.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding254.4e-08120162347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT +E+e +  a +q G++ +++I ++++  +   q++++++ +
   Csa04g050490.1 120 AWTHQEEESFFTALRQVGKN-FEKITSRVQ-SKNKDQVRHYYYRL 162
                      6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.72E-11111167IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-5114165IPR009057Homeodomain-like
PROSITE profilePS5129313.52116167IPR017884SANT domain
SMARTSM007175.1E-6117165IPR001005SANT/Myb domain
CDDcd001672.20E-5120163No hitNo description
PfamPF002493.5E-6120162IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 805 aa     Download sequence    Send to blast
KKTRKKKLFF VVSRLSRSWF NRRCSSEKYP RLQFRSIYPK FSTTLRQSHT LNPGNWKQKE  60
KHECLKQFAH YCEMQAEKNP EGRPIDEGHI SNQNSNPNLL SASISVAQFP VKKPTRQWAA  120
WTHQEEESFF TALRQVGKNF EKITSRVQSK NKDQVRHYYY RLVRRMNKLL GPELSLDAKN  180
PKDTNAAMLR WWSLLEKYSC KASKLHLKPR RFKLFLEALE HQLLKDRRKS IRKRACQGEN  240
FSSASLGNIS SHSRERGLDN RPFKLIVSDG QNVKKLGSGR ASTKHGESLG VNLGDEKEDT  300
AFGRGGRKRR KQGYKKWEKA AIDGVSLVAD AAEHLERTSI DKDMDDQEDL GSTRYLTGKS  360
PLSLCSSRDV PLSDANMQFS AKLKLQLFPI DECTRRSLEM DKHNPHLELT LSNRKKISSV  420
LEHLNRKWGS SSCATGELML FPYNARKETI TCHQRWTHDS FLSAAEVHSM VGSPSVFRLR  480
YGWFVHDASG SFISQVPTSD LCPSLEDDMN VDGVNEVNVL LTESGPLSVH STAEQPTSVE  540
PSLGLVCASG ETHDRPAEYR DDYEPASPTI SPLEHLISGN AQSAGEWADS LTNISIGDLL  600
SDVPDDIDSD GGNPPATEGS HCLLRDVSFA SDSFDAAIAA HILRHQNKPS APLPLTSGSS  660
SLWDDEETRD AFSFQNNRLA DSSKLANVAS PRGVGRVNGK PSQLVEALSV DEKLPDHGEP  720
MEEGPTDPHT MDSPGKSHCG LADIYWPDSL GPLDLDIRSS KYTEDLILSE SLGGLSRLIA  780
TSLDAFQNCS LFGFDNKKDK SNMV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g050490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0640680.0AY064068.1 Arabidopsis thaliana unknown protein (At2g36960) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010509412.20.0PREDICTED: TSL-kinase interacting protein 1
SwissprotQ8LJT80.0TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBLD7LJ990.0D7LJ99_ARALL; Tsl-kinase interacting protein 1
STRINGXP_010505244.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96332124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.10.0TSL-kinase interacting protein 1