PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g049540.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 247aa    MW: 28619.4 Da    PI: 6.9283
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g049540.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3102.42.5e-3239144199
                     EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                     f+k ltpsdv+k++rlv+pk++ae++        +   e++  l +ede+g+ W+++++y+++s++yvltkGW+++vk+++L++gD+v+F++++ 
  Csa04g049540.1  39 FEKPLTPSDVGKLNRLVIPKQHAERYfplaaaaaDA-VEKGLLLCFEDEEGKPWRFRYSYWNSSQSYVLTKGWSRYVKEKNLDAGDVVLFHRHRA 132
                     99*****************************99644.46888*************************************************8877 PP

                     SEE..EEEEE-S CS
              B3  88 sefelvvkvfrk 99 
                     ++++++++++r+
  Csa04g049540.1 133 DGGRFFIGWRRR 144
                     9999******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.5E-4133152IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.8E-3136144IPR015300DNA-binding pseudobarrel domain
CDDcd100174.59E-2738134No hitNo description
PROSITE profilePS5086314.21239145IPR003340B3 DNA binding domain
SMARTSM010192.5E-2439145IPR003340B3 DNA binding domain
PfamPF023621.1E-2939144IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080167Biological Processresponse to karrikin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MSITQYSSDF HYHSLMWQQQ QQQQHHHQND VVEEKEALFE KPLTPSDVGK LNRLVIPKQH  60
AERYFPLAAA AADAVEKGLL LCFEDEEGKP WRFRYSYWNS SQSYVLTKGW SRYVKEKNLD  120
AGDVVLFHRH RADGGRFFIG WRRRGDSSSS SDSYRHHQSN ASLQYHPHAG AQAVESQRVN  180
SKTLRLFGVN MECQLDSDWS EPSTPDGSNT CTTNHDQFHF YPQQQQHYPP PYYMDLSFTG  240
DVNRTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-49321441113B3 domain-containing transcription factor NGA1
5os9_B3e-49321441113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g049540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1175870.0AK117587.1 Arabidopsis thaliana At2g36080 mRNA for putative RAV2-like DNA binding protein, complete cds, clone: RAFL17-23-G02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010505139.10.0PREDICTED: B3 domain-containing protein At2g36080
RefseqXP_010516819.10.0PREDICTED: B3 domain-containing protein At2g36080
SwissprotQ8GYJ21e-154Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBLR0HR361e-155R0HR36_9BRAS; Uncharacterized protein
STRINGXP_010505139.10.0(Camelina sativa)
STRINGXP_010516819.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.11e-126B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Tanaka M, et al.
    The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation.
    Plant Cell, 2016. 28(11): p. 2830-2849
    [PMID:27760805]