PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa04g049100.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

ERF

Protein Properties

Length: 197aa MW: 21810.5 Da PI: 6.2911

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa04g049100.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.5	7e-18	45	94	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr + +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a+++++g Csa04g049100.1 45 TFRGVRMRQ-WGKWVSEIREPKK---KSRIWLGTFSTAEMAARAHDVAALAIKG 94 59**998.******854...6********************99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	2.88E-21	45	103	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	3.5E-32	45	103	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.576	45	102	IPR001471	AP2/ERF domain
SMART	SM00380	1.5E-39	45	108	IPR001471	AP2/ERF domain
CDD	cd00018	3.98E-34	46	104	No hit	No description
Pfam	PF00847	2.1E-11	46	94	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.9E-10	46	57	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.9E-10	68	84	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MERDDDCRRF QDSPAQKTER RVKNYPKKKR SVKDDEKVVV SKHPTFRGVR MRQWGKWVSE 60 IREPKKKSRI WLGTFSTAEM AARAHDVAAL AIKGGSAHLN FPELAYQLPR PASADPKDIQ 120 AAAAAAAAAV AIDMEVETSS PSPSPTVTET SSPGMTAISD DAFSDLPDLL LDVNRKIDGF 180 WESFPDDEEP FLSQSY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	5e-17	39	103	8	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00292	DAP	Transfer from AT2G35700	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa04g049100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC006068	1e-177	AC006068.4 Arabidopsis thaliana chromosome 2 clone T20F21 map ve016, complete sequence.
GenBank	AY560845	1e-177	AY560845.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At2g35700) mRNA, complete cds.
GenBank	BT025754	1e-177	BT025754.1 Arabidopsis thaliana At2g35700 mRNA, complete cds.
GenBank	CP002685	1e-177	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010505090.1	1e-143	PREDICTED: ethylene-responsive transcription factor ERF038-like
Swissprot	Q9ZQP3	1e-107	ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBL	R0FYV1	1e-111	R0FYV1_9BRAS; Uncharacterized protein
STRING	XP_010505090.1	1e-142	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2492	23	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35700.1	1e-87	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]