PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa04g047100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 258aa MW: 29603.7 Da PI: 5.3894 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 21.5 | 4.3e-07 | 123 | 167 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ r RR+ri ++ +eL +l+P +K + ae+ + A +Y+k Lq Csa04g047100.1 123 SIAARERRRRIADKTHELGKLIPGG-----QKQNTAEMFQSAAKYVKFLQ 167 577899*****************96.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.53E-10 | 115 | 177 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.303 | 117 | 166 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.8E-9 | 120 | 173 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.7E-5 | 123 | 167 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.2E-8 | 123 | 172 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 258 aa Download sequence Send to blast |
MSMDCLSHFF NYDPPVQLQD CFLPDMDMII PESDSFFLES QPQLQFHQPL FQEEAPSQTY 60 FDPFCDQFLS PQEISLPNPK TEIFNETHDL DSFLPTPKRQ KLVNSSYHCR GDDTKKPTLS 120 SQSIAARERR RRIADKTHEL GKLIPGGQKQ NTAEMFQSAA KYVKFLQSQV GILQLMQTTK 180 KCFLTSWVNL LTQGSSNVQS ETQVLLESQA IQEKLSTEEV CLVPCEMVQD LTTQETIRRN 240 PKIYREINKL LSRDLAK* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa04g047100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC004238 | 1e-125 | AC004238.3 Arabidopsis thaliana chromosome 2 clone F19I3 map ve016, complete sequence. | |||
GenBank | AY234412 | 1e-125 | AY234412.1 Arabidopsis thaliana hypothetical protein (At2g34820) mRNA, complete cds. | |||
GenBank | CP002685 | 1e-125 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010516643.1 | 1e-148 | PREDICTED: transcription factor bHLH53-like | ||||
Swissprot | Q84RD0 | 1e-135 | BH053_ARATH; Transcription factor bHLH53 | ||||
TrEMBL | D7LH48 | 1e-133 | D7LH48_ARALL; Predicted protein | ||||
STRING | XP_010516643.1 | 1e-147 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4547 | 25 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G34820.1 | 1e-124 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|