PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g046690.2
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 456aa    MW: 52292.3 Da    PI: 7.5025
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g046690.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.58.2e-191257449
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    ++   rqvtfskRr+g++KKA+EL +LC+ae  +++fs+ gk + y
  Csa04g046690.2 12 QDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSY 57
                    56778**********************************9986655 PP
2SRF-TF58.58.2e-19193238449
                     -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF   4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                     ++   rqvtfskRr+g++KKA+EL +LC+ae  +++fs+ gk + y
  Csa04g046690.2 193 QDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSY 238
                     56778**********************************9986655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.006161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-25172IPR002100Transcription factor, MADS-box
SMARTSM004322.1E-32160IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-18323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-221257IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-182338IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-183859IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-25182253IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.006182242IPR002100Transcription factor, MADS-box
SMARTSM004322.1E-32182241IPR002100Transcription factor, MADS-box
PfamPF003191.3E-22193238IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MGRRKIKMEM VQDMNTRQVT FSKRRTGLFK KASELATLCN AELGIVVFSP GGKPFSYGKP  60
DLDSVADRFL KEYDDNDDSD SGDEEGRGRR TRPKLKRMSE RLDTLNQEIE AEKKRGEKAQ  120
EKLESAGDRR FKKSIEALTL EELNEYKDKL ETVHDRVQSD ASRIQASSDL VLLSNDXLVK  180
QMGRRKIKME MVQDMNTRQV TFSKRRTGLF KKASELATLC NAELGIVVFS PGGKPFSYGK  240
PDLDSVADRF LKEYDDNDDS DSGDEEGRGR RTRPKLKRMS ERLDTLNQEI EAEKKRGEKA  300
QEKLESAGDR RFKKSIEALT LEELNEYKDK LETVHDRVQN RFLKEYDDND DSDSGDEEGR  360
GRRTRPKLKR MSERLDTLNQ EIEAEKKRGE KAQEKLESAG DRRFKKSIEA LTLEELNEYK  420
DKLETVHDRV QSDASRIQAS SDLVLLSNDK KSGLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-151260178MEF2C
5f28_B2e-151260178MEF2C
5f28_C2e-151260178MEF2C
5f28_D2e-151260178MEF2C
6byy_A2e-151260178MEF2 CHIMERA
6byy_B2e-151260178MEF2 CHIMERA
6byy_C2e-151260178MEF2 CHIMERA
6byy_D2e-151260178MEF2 CHIMERA
6bz1_A1e-151260178MEF2 CHIMERA
6bz1_B1e-151260178MEF2 CHIMERA
6bz1_C1e-151260178MEF2 CHIMERA
6bz1_D1e-151260178MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g046690.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019099742.11e-113PREDICTED: agamous-like MADS-box protein AGL29, partial
SwissprotO647033e-93AGL29_ARATH; Agamous-like MADS-box protein AGL29
TrEMBLA0A178VU298e-91A0A178VU29_ARATH; AGL29
STRINGXP_010504900.11e-111(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.11e-84AGAMOUS-like 29
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]