PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa04g046690.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 488aa MW: 55615.8 Da PI: 6.421 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 58.4 | 9e-19 | 12 | 57 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ++ rqvtfskRr+g++KKA+EL +LC+ae +++fs+ gk + y Csa04g046690.1 12 QDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSY 57 56778**********************************9986655 PP | |||||||
2 | SRF-TF | 58.4 | 9e-19 | 193 | 238 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ++ rqvtfskRr+g++KKA+EL +LC+ae +++fs+ gk + y Csa04g046690.1 193 QDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSY 238 56778**********************************9986655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 4.45E-25 | 1 | 72 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.006 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.1E-32 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.3E-18 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.4E-22 | 12 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.3E-18 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.3E-18 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.006 | 182 | 242 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.35E-25 | 182 | 253 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.1E-32 | 182 | 241 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.4E-22 | 193 | 238 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 488 aa Download sequence Send to blast |
MGRRKIKMEM VQDMNTRQVT FSKRRTGLFK KASELATLCN AELGIVVFSP GGKPFSYGKP 60 DLDSVADRFL KEYDDNDDSD SGDEEGRGRR TRPKLKRMSE RLDTLNQEIE AEKKRGEKAQ 120 EKLESAGDRR FKKSIEALTL EELNEYKDKL ETVHDRVQSD ASRIQASSDL VLLSNDXLVK 180 QMGRRKIKME MVQDMNTRQV TFSKRRTGLF KKASELATLC NAELGIVVFS PGGKPFSYGK 240 PDLDSVADRF LKEYDDNDDS DSGDEEGRGR RTRPKLKRMS ERLDTLNQEI EAEKKRGEKA 300 QEKLESAGDR RFKKSIEALT LEELNEYKDK LETVHDRVQS DASRIQASSD LVLLSNDKKS 360 GLLSLMXDSV ADRFLKEYDD NDDSDSGDEE GRGRRTRPKL KRMSERLDTL NQEIEAEKKR 420 GEKAQEKLES AGDRRFKKSI EALTLEELNE YKDKLETVHD RVQSDASRIQ ASSDLVLLSN 480 DKKSGLV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-15 | 1 | 260 | 1 | 78 | MEF2C |
5f28_B | 2e-15 | 1 | 260 | 1 | 78 | MEF2C |
5f28_C | 2e-15 | 1 | 260 | 1 | 78 | MEF2C |
5f28_D | 2e-15 | 1 | 260 | 1 | 78 | MEF2C |
6byy_A | 2e-15 | 1 | 260 | 1 | 78 | MEF2 CHIMERA |
6byy_B | 2e-15 | 1 | 260 | 1 | 78 | MEF2 CHIMERA |
6byy_C | 2e-15 | 1 | 260 | 1 | 78 | MEF2 CHIMERA |
6byy_D | 2e-15 | 1 | 260 | 1 | 78 | MEF2 CHIMERA |
6bz1_A | 1e-15 | 1 | 260 | 1 | 78 | MEF2 CHIMERA |
6bz1_B | 1e-15 | 1 | 260 | 1 | 78 | MEF2 CHIMERA |
6bz1_C | 1e-15 | 1 | 260 | 1 | 78 | MEF2 CHIMERA |
6bz1_D | 1e-15 | 1 | 260 | 1 | 78 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa04g046690.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010504899.1 | 1e-117 | PREDICTED: agamous-like MADS-box protein AGL29 | ||||
Swissprot | O64703 | 4e-93 | AGL29_ARATH; Agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A178VU29 | 1e-90 | A0A178VU29_ARATH; AGL29 | ||||
STRING | XP_010504900.1 | 1e-116 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 5e-88 | AGAMOUS-like 29 |
Publications ? help Back to Top | |||
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