PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa04g044320.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 386aa MW: 41899.6 Da PI: 5.9295 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.2 | 7e-09 | 220 | 267 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a +L + +++++sLq Csa04g044320.1 220 SHSLAERARREKINARMKLLQELVPGC----DKIQGTALVLDEIINHVQSLQ 267 8*************************9....889****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 6.49E-9 | 214 | 271 | No hit | No description |
SuperFamily | SSF47459 | 2.88E-15 | 214 | 285 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.684 | 216 | 266 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.4E-15 | 216 | 284 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-6 | 220 | 267 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.7E-8 | 222 | 272 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MDLTGGFGAR SGGVGGGPYR EPIGLESLHL GDEFRQLATT TSLTPDNAGG SFTALLELPP 60 TQAVELLHFT DSLSSSQAAA AATTGIGGGD IIIAPPPPPL HSFGGTTLTF PSNSALMERA 120 ARFSVIATEQ QQNNGNYHNN ETPTSSVPSN SSDRVKTEPP ETDSAMENQS LCPNQTNRSG 180 KRKDFDKKVK SSTKKNKSSE ETEKLPYVHV RARRGQATDS HSLAERARRE KINARMKLLQ 240 ELVPGCDKIQ GTALVLDEII NHVQSLQRQV EMLSMRLAAV NPRVDFNLDT ILASENASLM 300 DGSFSGTAMQ LAWPHQALET EQSFHQRQLQ PPPPPPQQWP FDGLNQPVWG REEDQAHGND 360 HSNLMAVSEN VMVGSANLHP NQVKME |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa04g044320.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY139773 | 0.0 | AY139773.1 Arabidopsis thaliana AT3g57800/T10K17_10 mRNA, complete cds. | |||
GenBank | BT003037 | 0.0 | BT003037.1 Arabidopsis thaliana AT3g57800/T10K17_10 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010504720.1 | 0.0 | PREDICTED: transcription factor bHLH60-like | ||||
Swissprot | Q3EAI1 | 0.0 | BH060_ARATH; Transcription factor bHLH60 | ||||
TrEMBL | A0A178V8Y3 | 0.0 | A0A178V8Y3_ARATH; Uncharacterized protein | ||||
STRING | XP_010504720.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2576 | 27 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57800.2 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
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