PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa04g043360.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 510aa MW: 57259.6 Da PI: 6.5215

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa04g043360.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48.7	1.4e-15	77	129	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ +hn+ Er RR++iNs f+ Lr++lP + +skKls +++ + +YI +Lq Csa04g043360.1 77 KKLNHNASERDRRKKINSLFSSLRSCLPAsD---QSKKLSIPATVSRSLKYIPELQ 129 6789***********************66...*****************998 PP
2	HLH	48.6	1.5e-15	322	374	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ +hn+ Er RR++iNs f+ Lr++lP + +skK+s e++ + +YI +Lq Csa04g043360.1 322 KKLNHNASERDRRKKINSLFSSLRSCLPAsD---QSKKPSIPETVSRSLKYIPELQ 374 6789***********************66...*****************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.564	76	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.0E-13	77	129	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.9E-14	77	145	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.70E-13	77	133	No hit	No description
SuperFamily	SSF47459	1.14E-15	77	146	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.1E-12	82	134	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.621	321	373	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.6E-13	322	374	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.31E-13	322	378	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.2E-14	322	387	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.58E-16	322	390	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.3E-12	327	379	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 510 aa Download sequence Send to blast
MCALVPPLFP NFGWPSTGEY NSYYLAGDNL NNGGFLDFPV PEETYGEVTA VAHNQNSFGG 60 SVSSEGNEID NNPVVIKKLN HNASERDRRK KINSLFSSLR SCLPASDQSK KLSIPATVSR 120 SLKYIPELQD QVKKLIKNKE ELLMQVSGQI NIEGYVKPQP KAVASYVSTV SATRLGDNEV 180 MVQISSSKIH NFPISNVLSG LEEDGFVLVD MSSLRSQGER LFYTLHLQVD KIENYELICE 240 ELSQRMLYFK KMCALAPSPL FPNFGWPSKY ESYYGAGDNL TNGPFLDFPV PQTYGVTHHQ 300 NSLGVSVSSE GNEIDNNPIV VKKLNHNASE RDRRKKINSL FSSLRSCLPA SDQSKKPSIP 360 ETVSRSLKYI PELQRQVKKL IQKKEELLVR VSGQRDFEQY NKQQPKAVAS YLSTVSAARL 420 EENEVMVQIS SSKTHNFSIS NVVSGLEEDG FVLVDISSSR SQGERLFYTL HLQVEKVDDY 480 HKINCEELSE RMLYLYEKYE NSLDSSQLV*

Sequence ? help Back to Top

Protein Sequence Length: 510 aa Download sequence Send to blast

MCALVPPLFP NFGWPSTGEY NSYYLAGDNL NNGGFLDFPV PEETYGEVTA VAHNQNSFGG  60
SVSSEGNEID NNPVVIKKLN HNASERDRRK KINSLFSSLR SCLPASDQSK KLSIPATVSR  120
SLKYIPELQD QVKKLIKNKE ELLMQVSGQI NIEGYVKPQP KAVASYVSTV SATRLGDNEV  180
MVQISSSKIH NFPISNVLSG LEEDGFVLVD MSSLRSQGER LFYTLHLQVD KIENYELICE  240
ELSQRMLYFK KMCALAPSPL FPNFGWPSKY ESYYGAGDNL TNGPFLDFPV PQTYGVTHHQ  300
NSLGVSVSSE GNEIDNNPIV VKKLNHNASE RDRRKKINSL FSSLRSCLPA SDQSKKPSIP  360
ETVSRSLKYI PELQRQVKKL IQKKEELLVR VSGQRDFEQY NKQQPKAVAS YLSTVSAARL  420
EENEVMVQIS SSKTHNFSIS NVVSGLEEDG FVLVDISSSR SQGERLFYTL HLQVEKVDDY  480
HKINCEELSE RMLYLYEKYE NSLDSSQLV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa04g043360.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by OBP3, auxin and salicylic acid (SA). Repressed by jasmonic acid (JA), UV LIGHT, and heat treatments. Up regulated by iron deficiency in roots and leaves, as well as by nickel, high zinc or high copper treatments. Repressed by high iron, low copper and low zinc treatments. {ECO:0000269\|PubMed:12679534, ECO:0000269\|PubMed:12887587, ECO:0000269\|PubMed:17516080}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010504610.1	0.0	PREDICTED: transcription factor ORG2-like
Swissprot	Q9M1K1	1e-153	ORG2_ARATH; Transcription factor ORG2
TrEMBL	R0HP72	1e-152	R0HP72_9BRAS; Uncharacterized protein
STRING	XP_010504610.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM482	28	153

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56970.1	1e-156	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Matsuoka K, et al. Gibberellin-induced expression of Fe uptake-related genes in Arabidopsis. Plant Cell Physiol., 2014. 55(1): p. 87-98 [PMID:24192296] Li X,Zhang H,Ai Q,Liang G,Yu D Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis in Arabidopsis thaliana. Plant Physiol., 2016. 170(4): p. 2478-93 [PMID:26921305] Shen C, et al. Involvement of endogenous salicylic acid in iron-deficiency responses in Arabidopsis. J. Exp. Bot., 2016. 67(14): p. 4179-93 [PMID:27208542] Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Kailasam S,Wang Y,Lo JC,Chang HF,Yeh KC S-Nitrosoglutathione works downstream of nitric oxide to mediate iron-deficiency signaling in Arabidopsis. Plant J., 2018. 94(1): p. 157-168 [PMID:29396986] Kurt F,Filiz E Genome-wide and comparative analysis of bHLH38, bHLH39, bHLH100 and bHLH101 genes in Arabidopsis, tomato, rice, soybean and maize: insights into iron (Fe) homeostasis. Biometals, 2018. 31(4): p. 489-504 [PMID:29546482]