PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g043160.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 236aa    MW: 26245.7 Da    PI: 6.6303
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g043160.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.1e-115298354
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    r+h+e+ErrRR+riNs +++Lr+ll  +      K +Ka+ L k+v+ +k+L
  Csa04g043160.1 52 RNHKEAERRRRERINSHLNKLRKLLSCN-----SKTDKATLLAKVVQRVKEL 98
                    68***********************997.....7************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.2244998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-85298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-1252109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-1252104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-955104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2604.2E-4136205No hitNo description
SuperFamilySSF550219.61E-5136208No hitNo description
CDDcd048736.61E-4137203No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MQPEISDHIF YSFLTGGLCA SSSTTSTTTT SSFYPFAIED TVSQEKALAA QRNHKEAERR  60
RRERINSHLN KLRKLLSCNS KTDKATLLAK VVQRVKELKQ ETLQITDETL PSETDEISVL  120
NSEDSSSNED GRIIFKVSFC CEDRPDLLQD LMETLESLQM ETIFADLTTV GGRSRNVLVV  180
AADKEHHGVE SVQFLQNALK SLLERSSKSV MMGHGGGGGG ERLKRRRALD HIIMV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15762ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g043160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010504585.11e-173PREDICTED: putative transcription factor bHLH107
SwissprotQ9LET01e-127BH107_ARATH; Putative transcription factor bHLH107
TrEMBLR0H5W51e-127R0H5W5_9BRAS; Uncharacterized protein
STRINGXP_010504585.11e-173(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36422762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.11e-128bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]