PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g041620.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Dof
Protein Properties Length: 380aa    MW: 41889.1 Da    PI: 9.1658
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g041620.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.71.2e-3894153362
          zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                     e+al+cprCdstntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg r+nk+s+
  Csa04g041620.1  94 EAALNCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGFRRNKRSK 153
                     6789*****************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-3977151IPR003851Zinc finger, Dof-type
PfamPF027012.3E-3296151IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.23697151IPR003851Zinc finger, Dof-type
PROSITE patternPS01361099135IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MYDVIFHHIC DLLPKKKRNH LKMDFSSLPV NQFDSHNWQQ QGSQHQLECV TADQNPSNYL  60
RQLSSPPASQ AGSSQTRVNS MVERARIAKV PLPEAALNCP RCDSTNTKFC YFNNYSLTQP  120
RHFCKTCRRY WTRGGALRNV PVGGGFRRNK RSKTNGGRSK STVLVSADNN TATTSSLTSH  180
PSYSNPSKFL SYGQSPGFTS NLPILPPLQS LGDYNSNNNG LDFGGIQISN VISGMSSSGR  240
ILDPWRIPSS QQTQQTPFLI NTNGLIQSSN AIYPLLEGNE GLNQADPQQK SSDYSNQLMS  300
KPLMELASRG DEAEQTRNVK AEENDQDQGR DANGLNNLSR NFLGNININS SGNNEYTSWG  360
SNSSWTGFTS NNSTGHLSF*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269|PubMed:12887587}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g041620.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:12887587}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010504390.10.0PREDICTED: dof zinc finger protein DOF3.6-like
SwissprotQ9M2U10.0DOF36_ARATH; Dof zinc finger protein DOF3.6
TrEMBLD7LV360.0D7LV36_ARALL; Obf-binding protein 3
STRINGXP_010504390.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17132886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.20.0OBF-binding protein 3