PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa04g041620.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 380aa MW: 41889.1 Da PI: 9.1658 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.7 | 1.2e-38 | 94 | 153 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+al+cprCdstntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg r+nk+s+ Csa04g041620.1 94 EAALNCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGFRRNKRSK 153 6789*****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-39 | 77 | 151 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.3E-32 | 96 | 151 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.236 | 97 | 151 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 99 | 135 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 380 aa Download sequence Send to blast |
MYDVIFHHIC DLLPKKKRNH LKMDFSSLPV NQFDSHNWQQ QGSQHQLECV TADQNPSNYL 60 RQLSSPPASQ AGSSQTRVNS MVERARIAKV PLPEAALNCP RCDSTNTKFC YFNNYSLTQP 120 RHFCKTCRRY WTRGGALRNV PVGGGFRRNK RSKTNGGRSK STVLVSADNN TATTSSLTSH 180 PSYSNPSKFL SYGQSPGFTS NLPILPPLQS LGDYNSNNNG LDFGGIQISN VISGMSSSGR 240 ILDPWRIPSS QQTQQTPFLI NTNGLIQSSN AIYPLLEGNE GLNQADPQQK SSDYSNQLMS 300 KPLMELASRG DEAEQTRNVK AEENDQDQGR DANGLNNLSR NFLGNININS SGNNEYTSWG 360 SNSSWTGFTS NNSTGHLSF* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269|PubMed:12887587}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa04g041620.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:12887587}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010504390.1 | 0.0 | PREDICTED: dof zinc finger protein DOF3.6-like | ||||
Swissprot | Q9M2U1 | 0.0 | DOF36_ARATH; Dof zinc finger protein DOF3.6 | ||||
TrEMBL | D7LV36 | 0.0 | D7LV36_ARALL; Obf-binding protein 3 | ||||
STRING | XP_010504390.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1713 | 28 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G55370.2 | 0.0 | OBF-binding protein 3 |