PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g040960.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GATA
Protein Properties Length: 327aa    MW: 36011 Da    PI: 6.5103
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g040960.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.44e-18235268134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C +C +tkTp+WR gp g+ktLCnaCG++y++ +
  Csa04g040960.1 235 CMHCEVTKTPQWRLGPMGPKTLCNACGVRYKSGR 268
                     99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.4E-941325IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.53229265IPR000679Zinc finger, GATA-type
SMARTSM004019.3E-16229279IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.4E-14233266IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.33E-14233292No hitNo description
CDDcd002027.35E-15234281No hitNo description
PROSITE patternPS003440235260IPR000679Zinc finger, GATA-type
PfamPF003204.2E-16235268IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009845Biological Processseed germination
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MIGQSFPEDL DCGNFFDNMD DLMDFPGGDI DVGFGIGDSD SFPTIWTSHQ DTWPAASDPL  60
FSSNTTTNSD SSPELYVPFE DIVKVDRPPS FVEESLVEKK EDSFSTNTDS SSSHSQFRSS  120
SPVSVLESSS SSSQTTNTTS LVLPGKHGRP RTKRPRPPVQ DKDRVKDNNN VCGADSRLII  180
RIPKQFLSDH NKMINKKKKK KAKVSSSSSS SGIDLEVNGN NVDSYSSELH PVRKCMHCEV  240
TKTPQWRLGP MGPKTLCNAC GVRYKSGRLF PEYRPAASPT FTPALHSNSH KKVAEMRSKR  300
CSDGSYITEE NDLQELIPNN AYIGVD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152156KRPRP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g040960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4121070.0AF412107.1 Arabidopsis thaliana AT3g54810/F28P10_210 mRNA, complete cds.
GenBankAK3175030.0AK317503.1 Arabidopsis thaliana AT3G54810 mRNA, complete cds, clone: RAFL23-14-K23.
GenBankAY0780290.0AY078029.1 Arabidopsis thaliana AT3g54810/F28P10_210 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010504307.10.0PREDICTED: GATA transcription factor 8
RefseqXP_010504308.10.0PREDICTED: GATA transcription factor 8
SwissprotQ9SV300.0GATA8_ARATH; GATA transcription factor 8
TrEMBLD7LUX80.0D7LUX8_ARALL; GATA transcription factor
STRINGXP_010504307.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49752751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.21e-136GATA family protein
Publications ? help Back to Top
  1. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]