PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g040500.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family SRS
Protein Properties Length: 1007aa    MW: 111961 Da    PI: 6.9286
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g040500.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF7021555.3e-488569963154
          DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaesk 97 
                     ++++ C+dCGn+akk+C +eRCRtCCksrg++CathvkstWvp++         +++ss       e ++k k +++s+ + ++ +t+++++ ++
  Csa04g040500.1 856 KTEKVCRDCGNRAKKECLFERCRTCCKSRGYNCATHVKSTWVPSSASTRS----SSSSS-------ERKKKLKLDKQSSPNVSILQTTTTTSRQE 939
                     56789**************************************9765431....11111.......11111122222334444444444444444 PP

          DUF702  98 keletsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154
                     ++++   lP +++++avfr++rv+++++ +++e++Yq++v+i+GhvfkG+L+++G+++
  Csa04g040500.1 940 RSFKE-GLPGKIEAPAVFRRTRVTAISNnEQAEIGYQATVTISGHVFKGFLHYYGVDH 996
                     44443.3*******************9868899***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF007032.1E-851101IPR006102Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich
SuperFamilySSF493032.3E-1054101IPR006102Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich
Gene3DG3DSA:2.60.40.3204.3E-1159101IPR013812Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain
Gene3DG3DSA:3.20.20.808.2E-99108384IPR013781Glycoside hydrolase, catalytic domain
SuperFamilySSF514452.11E-90108385IPR017853Glycoside hydrolase superfamily
PfamPF028361.4E-99108388IPR006103Glycoside hydrolase family 2, catalytic domain
PRINTSPR001324.0E-26112126IPR006101Glycoside hydrolase, family 2
PRINTSPR001324.0E-26143161IPR006101Glycoside hydrolase, family 2
PROSITE patternPS007190153178IPR023230Glycoside hydrolase, family 2, conserved site
PROSITE patternPS006080218232IPR023232Glycoside hydrolase, family 2, active site
PRINTSPR001324.0E-26218233IPR006101Glycoside hydrolase, family 2
PRINTSPR001324.0E-26291306IPR006101Glycoside hydrolase, family 2
SuperFamilySSF493032.37E-24381491IPR006102Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich
Gene3DG3DSA:2.60.40.3204.2E-22385493IPR013812Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain
PfamPF163537.5E-14396489IPR032312Beta-galactosidase, domain 4
Gene3DG3DSA:2.70.98.108.0E-71506758IPR014718Glycoside hydrolase-type carbohydrate-binding
SuperFamilySSF746508.79E-63512759IPR011013Galactose mutarotase-like domain
SMARTSM010381.2E-68516772IPR004199Beta galactosidase small chain/ domain 5
PfamPF029291.3E-56520757IPR004199Beta galactosidase small chain/ domain 5
PfamPF051426.2E-44859995IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016236.0E-26860901IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016246.9E-28946994IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0009341Cellular Componentbeta-galactosidase complex
GO:0004565Molecular Functionbeta-galactosidase activity
GO:0030246Molecular Functioncarbohydrate binding
Sequence ? help Back to Top
Protein Sequence    Length: 1007 aa     Download sequence    Send to blast
MQESSKDLVL SNFVIEAAVY STKNWYNSEG FSSELSPKVA NLTLNPSPSP VLGFHGYLLE  60
GKLDSPNLWS AEQPNVYILV LTLKDTSGKV LDSESSIVGI RQVSKAFKQL LVNGHPVVIK  120
GVNRHEHHPR VGKTNIESCM VKDLILMKEY NINAVRNSHY PQHPRWYELC DLFGMYMIDE  180
ANIETHGFDL SGHLKHPAKE PSWAAAMLDR VVGMVERDKN HTCIISWSLG NEAGYGPNHS  240
AMAGWIREKD PSRLVHYEGG GSRTSSTDIV CPMYMRVWDI VKIALDQNES RPLILCEYQH  300
AMGNSNGNID EYWEAIDNTF GLQGGFIWDW VDQGLLKLGS DGIKRWAYGG DFGDQPNDLN  360
FCLNGLIWPD RTPHPALHEV KYCYQPIKVS LTDGTIKVAN TYFFHTTEEL EFSWTIHGDG  420
LKLGSGGLSI PVIKPQNSFD MEWKSGPWFS FWNDSNAGEL FLTITAKLLN PTRSLEAGHL  480
VSSTQIPLPA KRQIIPQAIK KTDTIITCET IGDYIKISQQ ESWELMINVR KGAIEGWKIQ  540
GVLLMNEAIL PCFWRAPTDN DKGGGDSSYF SRWQAAQLDN VEFLVESCSV TSITDKSVEI  600
EFIYVGSPAS GSSKSEALFK VNVTYLIYGS GNIITNWFVE PNSDLPPLPR VGIEFHIEKT  660
LDRVKWYGKG PFECYPDRKS AAHVAIYEHN VGDMHVPYIV PGESGGRTDV RWVTFQNKDG  720
VGIYASTYGS SSPMQMNASY YTTSELHRAT HEEDLIKGQN IEPPRAFNIT ATVANPPSSL  780
SWPPPQQQPS SSSTPFAAVS IAPDHHSSSS SVAAVGISTP DYMLGLRNII LLSPPPPQIT  840
RPSLSPVIFA AVEENKTEKV CRDCGNRAKK ECLFERCRTC CKSRGYNCAT HVKSTWVPSS  900
ASTRSSSSSS ERKKKLKLDK QSSPNVSILQ TTTTTSRQER SFKEGLPGKI EAPAVFRRTR  960
VTAISNNEQA EIGYQATVTI SGHVFKGFLH YYGVDHNKAF PCLSQK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1f4a_A1e-14659755289974BETA-GALACTOSIDASE
1f4a_B1e-14659755289974BETA-GALACTOSIDASE
1f4a_C1e-14659755289974BETA-GALACTOSIDASE
1f4a_D1e-14659755289974BETA-GALACTOSIDASE
1f4h_A1e-14659755289974BETA-GALACTOSIDASE
1f4h_B1e-14659755289974BETA-GALACTOSIDASE
1f4h_C1e-14659755289974BETA-GALACTOSIDASE
1f4h_D1e-14659755289974BETA-GALACTOSIDASE
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g040500.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0917800.0AY091780.1 Arabidopsis thaliana At3g54435 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010504247.10.0PREDICTED: uncharacterized protein LOC104781308
TrEMBLA0A3P6CJ230.0A0A3P6CJ23_BRAOL; Uncharacterized protein
STRINGXP_010504247.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM898022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54430.14e-90SHI-related sequence 6