PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g039400.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family S1Fa-like
Protein Properties Length: 77aa    MW: 8287.03 Da    PI: 10.608
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g039400.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA135.41.4e-42876270
            S1FA  2 avakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                    ++a++eakGlnPGlivllvvg +l++fl++ny+lyvyaqknlPPrkkkPvskkklkreklkqGv+vPGe
  Csa04g039400.1  8 GKAAAEAKGLNPGLIVLLVVGLPLVMFLIANYVLYVYAQKNLPPRKKKPVSKKKLKREKLKQGVPVPGE 76
                    57899***************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046892.1E-371276IPR006779DNA binding protein S1FA
ProDomPD0190135.0E-43376No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
MDGEDFAGKA AAEAKGLNPG LIVLLVVGLP LVMFLIANYV LYVYAQKNLP PRKKKPVSKK  60
KLKREKLKQG VPVPGE*
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g039400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3701761e-97AF370176.1 Arabidopsis thaliana unknown protein (At3g53370) mRNA, complete cds.
GenBankAY0591361e-97AY059136.1 Arabidopsis thaliana unknown protein (At3g53370) mRNA, complete cds.
GenBankAY0888451e-97AY088845.1 Arabidopsis thaliana clone 97045 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010504099.15e-46PREDICTED: DNA-binding protein S1FA1-like
SwissprotQ423375e-21S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBLA0A078J2Z03e-24A0A078J2Z0_BRANA; BnaCnng30990D protein
TrEMBLA0A3P6GBG23e-24A0A3P6GBG2_BRAOL; Uncharacterized protein
STRINGXP_010504099.12e-45(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37120.17e-10S1FA-like DNA-binding protein