PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa04g039340.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Protein Properties

Length: 278aa MW: 31509.1 Da PI: 4.4357

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa04g039340.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	63.3	3.8e-20	13	101	1	97
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ffkv+ + ++s+ + +p +f+e+ + + t +l+ + g+ W+v + +k +++ ++t+GW++F+++++L eg+f++F +dg+++f v+ Csa04g039340.1 13 FFKVF--LSETASKSFGIPLSFMEHLADP--LPNTAKLQGTGGKDWTVSM--TKIRDGAYFTDGWSKFAQDHELVEGEFLTFVYDGNRTF--EVS 99 89999..556666668*****666655..889************..*******************************98888..777 PP EE CS B3 96 vf 97 vf Csa04g039340.1 100 VF 101 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	5.3E-23	11	105	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	13.267	11	104	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	3.1E-23	11	103	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.89E-20	11	101	No hit	No description
Pfam	PF02362	2.0E-17	13	101	IPR003340	B3 DNA binding domain
SMART	SM01019	1.3E-20	13	104	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	3.34E-9	178	269	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	4.3E-6	178	269	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	0.38	182	272	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MAEYEDDVLL PRFFKVFLSE TASKSFGIPL SFMEHLADPL PNTAKLQGTG GKDWTVSMTK 60 IRDGAYFTDG WSKFAQDHEL VEGEFLTFVY DGNRTFEVSV FGRLGCKETR AEAETIELLG 120 SSSDSEEDEE EPSTDVDYDI RLGQNEEISQ SIYPFEEEET ESDAAAVFEG NVDIAALTNP 180 HFPTTLKNRI YELLIPANIV KENSLEFGES VKYIDEEGTL VGLRGKWADN RVCFKGWDRI 240 CRRNRLKKHQ DTVECELLHD RNKMVHSIRV HVMRGTA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1yel_A	4e-20	12	106	10	104	At1g16640
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa04g039340.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010504088.1	0.0	PREDICTED: B3 domain-containing protein REM20-like
Swissprot	Q8LAV5	1e-129	REM20_ARATH; B3 domain-containing protein REM20
TrEMBL	R0HPM7	1e-161	R0HPM7_9BRAS; Uncharacterized protein
STRING	XP_010504088.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1561	23	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53310.1	1e-127	B3 family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]