PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa04g038830.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

GRF

Protein Properties

Length: 397aa MW: 44004.2 Da PI: 7.4279

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa04g038830.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	80	2.2e-25	154	198	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrC+RtDGKkWRCsr+v++g+k+C+rH+hrgr+rsrk++e+ Csa04g038830.1 154 DPEPGRCKRTDGKKWRCSRDVVAGHKYCDRHIHRGRNRSRKPVET 198 79****************************************986 PP
2	QLQ	53	1e-18	85	120	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 F+++Q+q+L+ Q+l+y+y++a++ vP+eLl++i+k Csa04g038830.1 85 LFSWTQWQELELQALIYRYMLAGASVPQELLLPIKK 120 5*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	2.8E-11	84	120	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	20.299	85	120	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	4.9E-13	86	118	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.479	154	198	IPR014977	WRC domain
Pfam	PF08879	1.8E-21	155	197	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MDLQLKQWRS QQQNESEEQG SATKISNFFF DQIQSQTAAT SAAAAAAAAA PLPLFVPEPT 60 SSSSFSCFSP DSSSSSSKFL KIGNLFSWTQ WQELELQALI YRYMLAGASV PQELLLPIKK 120 SLIHQSPMHF LHHPLQHSFP HQQPSWYWGR GAMDPEPGRC KRTDGKKWRC SRDVVAGHKY 180 CDRHIHRGRN RSRKPVETAT TTTTTTTATT AAPSFVLGEE LSHGHGHGPN NNHFFSSGSS 240 QHLQLNHQQS CSSEMKQESN NNSNNHKRPY EAHNGFSNGR SDDGHILRHF FDDWPRSSDS 300 ASSPMSSSNC HLSISMPGNG NTPSDVSLKL STGNEEEEEN MRNNNNNNSE REQLNWWSNG 360 GNHHNNMGGP LAEALRSASS TPGVLHQMGI STQVFH*

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MDLQLKQWRS QQQNESEEQG SATKISNFFF DQIQSQTAAT SAAAAAAAAA PLPLFVPEPT  60
SSSSFSCFSP DSSSSSSKFL KIGNLFSWTQ WQELELQALI YRYMLAGASV PQELLLPIKK  120
SLIHQSPMHF LHHPLQHSFP HQQPSWYWGR GAMDPEPGRC KRTDGKKWRC SRDVVAGHKY  180
CDRHIHRGRN RSRKPVETAT TTTTTTTATT AAPSFVLGEE LSHGHGHGPN NNHFFSSGSS  240
QHLQLNHQQS CSSEMKQESN NNSNNHKRPY EAHNGFSNGR SDDGHILRHF FDDWPRSSDS  300
ASSPMSSSNC HLSISMPGNG NTPSDVSLKL STGNEEEEEN MRNNNNNNSE REQLNWWSNG  360
GNHHNNMGGP LAEALRSASS TPGVLHQMGI STQVFH*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa04g038830.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503, ECO:0000269\|PubMed:20023165}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY102637	0.0	AY102637.1 Arabidopsis thaliana transcription activator (GRF4) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010504040.1	0.0	PREDICTED: growth-regulating factor 4-like isoform X1
Refseq	XP_010504042.1	0.0	PREDICTED: growth-regulating factor 4-like isoform X2
Swissprot	Q8L8A7	0.0	GRF4_ARATH; Growth-regulating factor 4
TrEMBL	R0HJT5	0.0	R0HJT5_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_010504040.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1926	26	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52910.1	1e-151	growth-regulating factor 4

Publications ? help Back to Top
Kuijt SJ, et al. Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors. Plant Physiol., 2014. 164(4): p. 1952-66 [PMID:24532604] Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]