PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g036840.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GATA
Protein Properties Length: 316aa    MW: 34784.6 Da    PI: 5.7554
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g036840.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.31.1e-18221255135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l
  Csa04g036840.1 221 CSHCGVQKTPQWRAGPMGAKTLCNACGVRFKSGRL 255
                     *******************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.3E-966312IPR016679Transcription factor, GATA, plant
SuperFamilySSF577165.7E-14213277No hitNo description
PROSITE profilePS5011411.899215251IPR000679Zinc finger, GATA-type
SMARTSM004011.3E-16215269IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.4E-15219253IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.40E-14220268No hitNo description
PfamPF003201.3E-16221255IPR000679Zinc finger, GATA-type
PROSITE patternPS003440221246IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MESVVELAAL KNSSKTLTNG GAQNGDDFSV DDLLNFSNED DEDALVEDET DLKKPQRKRG  60
LSSDETTLLM SNDFSAVNFP TTELAVPMDD LAELEWLSNF VDDSFTPYSS LAPTKKPVWL  120
TGNRRRSVPP VKEETCFKAP PPPVQIRPKR ARTGVTYWSH GSPSSSSSSA TSSSSGPPSS  180
PLWLSGFDLD LLDEPRVKKQ KKTKKLADQT QTQTQTQTRR CSHCGVQKTP QWRAGPMGAK  240
TLCNACGVRF KSGRLLPEYR PACSPTFSSE LHSNHHRKVI EMRRKKETSQ EEGDDDDDDD  300
GTTGLNQTVQ AVPSF*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g036840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1329803e-74AL132980.3 Arabidopsis thaliana DNA chromosome 3, BAC clone F24M12.
GenBankCP0026863e-74CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010503788.10.0PREDICTED: GATA transcription factor 6-like
RefseqXP_010503789.10.0PREDICTED: GATA transcription factor 6-like
SwissprotQ9SD381e-121GATA6_ARATH; GATA transcription factor 6
TrEMBLD7LTM81e-123D7LTM8_ARALL; GATA transcription factor
STRINGXP_010503788.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36982561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51080.11e-114GATA transcription factor 6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]