PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa04g036630.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ZF-HD | ||||||||
Protein Properties | Length: 259aa MW: 29517.9 Da PI: 10.3855 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 92 | 5.5e-29 | 64 | 117 | 4 | 58 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 ++Y+eC+kNhAas+Ggh++DGC+Ef++ geegt alkCaAC+CHR+FHR+ev Csa04g036630.1 64 AKYRECQKNHAASTGGHVIDGCCEFLAG-GEEGTLGALKCAACNCHRSFHRKEVY 117 68*************************8.999********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 3.4E-27 | 65 | 116 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-16 | 65 | 116 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.1E-25 | 65 | 116 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.52 | 66 | 115 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 8.7E-26 | 183 | 250 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.31E-17 | 184 | 250 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 8.827 | 187 | 251 | IPR001356 | Homeobox domain |
TIGRFAMs | TIGR01565 | 1.8E-25 | 189 | 246 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MEFGGKGNAI TSTTMISTNT LEVKARTKTF PDPQTKPESA DPSIALFPIK KETQKPRTRA 60 DQPAKYRECQ KNHAASTGGH VIDGCCEFLA GGEEGTLGAL KCAACNCHRS FHRKEVYGHK 120 QDQMMITPAF YSSNSSYKAM QPRVMHPTGE IGRRTSSSSE DMKKILSHRN QNVDGRCLMM 180 MMTTTRKKKK RVRTKINEEQ KEKMKEFAER LGWRMQKKDE DEIDKFCKVV NLRRQVFKVW 240 MHNNKQAMKR NSNTTSEL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-18 | 190 | 247 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 190 | RKKKKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa04g036630.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK175649 | 1e-179 | AK175649.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-13-N07. | |||
GenBank | AL049862 | 1e-179 | AL049862.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F18B3. | |||
GenBank | AY086020 | 1e-179 | AY086020.1 Arabidopsis thaliana clone 20695 mRNA, complete sequence. | |||
GenBank | CP002686 | 1e-179 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010503763.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 7-like | ||||
Swissprot | Q9SVL0 | 1e-144 | ZHD7_ARATH; Zinc-finger homeodomain protein 7 | ||||
TrEMBL | A0A178VL56 | 1e-142 | A0A178VL56_ARATH; ZHD7 | ||||
STRING | XP_010503763.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13854 | 15 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50890.1 | 1e-133 | homeobox protein 28 |