PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa04g036060.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Dof

Protein Properties

Length: 316aa MW: 33442.2 Da PI: 9.4838

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa04g036060.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.2	3.1e-37	87	145	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++l+cprCds+ntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++PvGgg+rk k+ Csa04g036060.1 87 NEQLPCPRCDSNNTKFCYYNNYNFSQPRHFCKGCRRYWTHGGTLRDIPVGGGTRKGAKR 145 6899***************************************************8776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-27	86	144	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.8E-32	88	143	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.798	90	144	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	92	128	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MSLSPLFSHL HKNQKNLTLS YPKVSTFTSL LQTQTIKAST FTFDSRSFHP HKQTKSFHFF 60 SPVMPTSDSG DSRRIVMKPN GVTAPNNEQL PCPRCDSNNT KFCYYNNYNF SQPRHFCKGC 120 RRYWTHGGTL RDIPVGGGTR KGAKRSRNCS SSNSASSSVS AVNSVVSSAN GVRCVTPVLF 180 PHSSISNGCT HSVDSDAKGS ALSLCGSFTS MLNHNAAATA THGSGSVIGL GGFGIGLGSG 240 YDDVSFGLGR AMWPFSTVGD AGTTNAGSNG GHHAVPMPAT WQFEGLESNV GGGFVSGEYF 300 AWPDLSITTP GNSLK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa04g036060.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin and salicylic acid (SA). {ECO:0000269\|PubMed:10758484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010503714.1	0.0	PREDICTED: dof zinc finger protein DOF3.4-like
Swissprot	Q39088	1e-127	DOF34_ARATH; Dof zinc finger protein DOF3.4
TrEMBL	R0FTS8	1e-136	R0FTS8_9BRAS; Uncharacterized protein
STRING	XP_010503714.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2286	28	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50410.1	1e-127	OBF binding protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]