PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa04g035900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ERF | ||||||||
Protein Properties | Length: 157aa MW: 17236.7 Da PI: 10.3784 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.3 | 3.9e-18 | 21 | 69 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +kG+r +k +g+WvAeIr+p +kr r +lg++ t+e Aa+a++ a +l+g Csa04g035900.1 21 FKGIRMRK-WGKWVAEIREP---NKRSRLWLGSYATPEAAARAYDTAVFYLRG 69 8*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.339 | 20 | 77 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.7E-35 | 20 | 83 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.02E-21 | 21 | 78 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.2E-8 | 21 | 32 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.2E-12 | 21 | 69 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-29 | 21 | 78 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.73E-26 | 21 | 79 | No hit | No description |
PRINTS | PR00367 | 3.2E-8 | 43 | 59 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MDGGAAAAVD VGGARKRERP FKGIRMRKWG KWVAEIREPN KRSRLWLGSY ATPEAAARAY 60 DTAVFYLRGP TATLNFPELI PCIENSAAED MSAATIRKKA TEVGAQVDAI GTTVVQNNKR 120 RRVFSQKRDF GGGLLKLVDL NKLPDPEYQD DNLVAK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-15 | 21 | 78 | 15 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 118 | 122 | KRRRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa04g035900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010503696.1 | 1e-111 | PREDICTED: ethylene-responsive transcription factor ERF011-like | ||||
Swissprot | Q9SNE1 | 4e-94 | ERF11_ARATH; Ethylene-responsive transcription factor ERF011 | ||||
TrEMBL | R0H6F6 | 2e-99 | R0H6F6_9BRAS; Uncharacterized protein | ||||
STRING | XP_010503696.1 | 1e-111 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50260.1 | 9e-93 | cooperatively regulated by ethylene and jasmonate 1 |
Publications ? help Back to Top | |||
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