 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Csa04g035530.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
| Family |
GRAS |
| Protein Properties |
Length: 410aa MW: 46191 Da PI: 6.6838 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa04g035530.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 340.5 | 2.9e-104 | 27 | 406 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96
++lLl+cA+a++s+d++la+++L+ l+++a pdgd++qRl++ f++AL +r ++++++l+++++ + +++ + ++ l +f++++P+++f+++
Csa04g035530.1 27 EQLLLHCATAIDSNDAALAHQILWVLNNTAPPDGDSTQRLTTAFLRALLSRAVSKTPTLSSTISFLPPADELHRFSVVELAAFVDLTPWHRFGFI 121
79*****************************************************************997666666666677************* PP
GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl...vak 184
+aN aIl aveg ++vHi+D+++++++Q p+L++a+asR ++pp l++T+v+s++++ + ++ee+g++L +fA++ ++++ef+++ +++
Csa04g035530.1 122 AANAAILTAVEGYSTVHIVDLSLTHCMQIPTLIDAMASRLnKPPPLLKLTVVSSSDNFppfINISYEELGSKLVSFATTRNITMEFTIIpstYSD 216
***************************************966777*********99999999**************************9886677 PP
GRAS 185 rledleleeLrvkp...gEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
+++l l++Lrv p +Eal+Vn++++l +++de+++++s r+ +Lk ++sl+P++v+++e+++d++s+++++r+ +a++y + fd++++
Csa04g035530.1 217 GFSSL-LQQLRVYPssfNEALVVNCHMMLRYIPDETLTSSSssLRTVFLKHLRSLNPRIVTLIEEDVDLTSGNLVNRLRSAFNYLWIPFDTTDTF 310
78888.******************************998887799************************************************** PP
GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLv 368
+ e+r+++E+e ++++i+nvva+egaer+er et+++W er++ea F+ v+++e+a++++k++l++++ ++g++ e++++slvl+Wk++++v
Csa04g035530.1 311 M---REQRRWYEAE-ISWKIENVVAKEGAERVERSETKRRWFERMREAEFGGVRVKEEAVADVKAMLEEHAvGWGMKKEDDDNSLVLTWKGHSVV 401
6...99********.******************************************************************************** PP
GRAS 369 svSaW 373
++++W
Csa04g035530.1 402 FATVW 406
***** PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 410 aa
Download sequence Send
to blast |
MTKTRIRNLT RLPSPKPLRG GDANFMEQLL LHCATAIDSN DAALAHQILW VLNNTAPPDG 60
DSTQRLTTAF LRALLSRAVS KTPTLSSTIS FLPPADELHR FSVVELAAFV DLTPWHRFGF 120
IAANAAILTA VEGYSTVHIV DLSLTHCMQI PTLIDAMASR LNKPPPLLKL TVVSSSDNFP 180
PFINISYEEL GSKLVSFATT RNITMEFTII PSTYSDGFSS LLQQLRVYPS SFNEALVVNC 240
HMMLRYIPDE TLTSSSSSLR TVFLKHLRSL NPRIVTLIEE DVDLTSGNLV NRLRSAFNYL 300
WIPFDTTDTF MREQRRWYEA EISWKIENVV AKEGAERVER SETKRRWFER MREAEFGGVR 360
VKEEAVADVK AMLEEHAVGW GMKKEDDDNS LVLTWKGHSV VFATVWIPI*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK226623 | 0.0 | AK226623.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-29-K13. |
| GenBank | AL132978 | 0.0 | AL132978.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F3A4. |
| GenBank | BT012553 | 0.0 | BT012553.1 Arabidopsis thaliana At3g49950 gene, complete cds. |
| GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
