PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g035520.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family LBD
Protein Properties Length: 242aa    MW: 26172.7 Da    PI: 7.6001
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g035520.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.41.7e-312103197
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C+l+p++     p++q +++ +v+k+FG++ ++++++a+pe + +++++sl+yeA+ r+ +Pv+Gavg++++++++++q+
  Csa04g035520.1   2 SCNGCRVLRKGCSENCILRPCIqwiesPEAQGHATVFVAKFFGRAGLMSFISAVPEPQCPALFQSLLYEACGRTVNPVNGAVGLLWTGNWNICQA 96 
                     6********************************************************************************************** PP

          DUF260  91 kaelall 97 
                     ++e++l+
  Csa04g035520.1  97 AVETVLR 103
                     *999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.3541107IPR004883Lateral organ boundaries, LOB
PfamPF031956.0E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSENCILR PCIQWIESPE AQGHATVFVA KFFGRAGLMS FISAVPEPQC  60
PALFQSLLYE ACGRTVNPVN GAVGLLWTGN WNICQAAVET VLRGGSLKPI PELLNGGGAG  120
FAGFPSPTSD EASEICTEML NLRKDDSGDR NIYHHCRFSS SRTRSTASPP KRRRLTSEQP  180
SSELDLSLIP SFPIKTAPFK EDTPSMYSED SVTTVSFRDN NAGDRYVRGG GETAKLLNLF  240
A*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170174KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g035520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0857610.0AY085761.1 Arabidopsis thaliana clone 17840 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010503663.11e-179PREDICTED: LOB domain-containing protein 38
SwissprotQ9SN231e-153LBD38_ARATH; LOB domain-containing protein 38
TrEMBLR0HL691e-165R0HL69_9BRAS; Uncharacterized protein
STRINGXP_010503663.11e-179(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.11e-139LOB domain-containing protein 38