PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa04g030900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 243aa MW: 27266.4 Da PI: 5.9063 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 23.9 | 5.3e-08 | 22 | 60 | 13 | 50 |
HHHHHHHHHHHHHHHHHHHT-EEEEEEE-T.TSEEEEEE CS SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifss.tgklyeys 50 f +R g KKA ELSvLC+ v + + + +++l+ ++ Csa04g030900.1 22 FKQRFPGFKKKAIELSVLCGNSVGFVCYTPdDNNLHIWP 60 778889999**************9888876257888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 9.615 | 2 | 50 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.92E-11 | 5 | 89 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.12E-16 | 7 | 90 | No hit | No description |
Pfam | PF00319 | 5.3E-7 | 21 | 56 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MAPRSKSYVD DDNDLKMKRK VFKQRFPGFK KKAIELSVLC GNSVGFVCYT PDDNNLHIWP 60 EPQEKPQALT QLLAKFNALS DHKRKNNACD RYDFPDIKGL SGEDLRRHVD NLDSHLVGIK 120 QRKLSILRRG NSKPKETETE EDRVSDRLGF GHVDFGGYHE TAMGSCAASE VYRDVGVSDS 180 SLLDPFTSGR DYFPTDNDFG VCANDGAWDH SWMDLKFSST LFPAGYDPLV GATDEYQTLV 240 TI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa04g030900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010470829.1 | 1e-142 | PREDICTED: agamous-like MADS-box protein AGL49 | ||||
Swissprot | Q9ZUI9 | 4e-47 | AGL49_ARATH; Agamous-like MADS-box protein AGL49 | ||||
TrEMBL | D7KXG1 | 3e-88 | D7KXG1_ARALL; Uncharacterized protein | ||||
STRING | XP_010470829.1 | 1e-141 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11232 | 9 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G60040.1 | 2e-49 | AGAMOUS-like 49 |
Publications ? help Back to Top | |||
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