PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa04g030560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | TCP | ||||||||
Protein Properties | Length: 509aa MW: 54481.1 Da PI: 7.2086 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 135.8 | 3.6e-42 | 115 | 292 | 2 | 134 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 + k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+p+++++tgt++++a+++ + s +ss+s+ s + Csa04g030560.1 115 PLKRASTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTsLNISLRSSGSSMSLPshfrsaa 209 57999***********************************************************7777766665555555555333334444445 PP TCP 89 ...................................kaaksaa.kskksqksaasalnlakesrakararare.rtrekmrikn 134 +a +s+ ++ ++ ++++s+ln++++++++ ++++ e ++++k r+++ Csa04g030560.1 210 stfspnnifppamlqqqqqqrgggggflhhphlqgRATTSSLfPGIDNFTPTTSFLNFHNQTKQEGDQDSDElSSEKKRRLQT 292 55555666666666666666777799********988888889*****************************66666666654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.9E-41 | 120 | 297 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.505 | 121 | 175 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0010029 | Biological Process | regulation of seed germination | ||||
GO:0010229 | Biological Process | inflorescence development | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 509 aa Download sequence Send to blast |
MQKPTSSILN VIMDGGDNVG GGDDHHRHLH HHHRPTFPFQ LLGKRDPDDN HQQQQQQPSP 60 SSSSSLFSLH QHQQLSQSQP QPQLQQKPQP QTTTQKELSQ TQEDSTAVVA AKKPPLKRAS 120 TKDRHTKVDG RGRRIRMPAL CAARVFQLTR ELGHKSDGET IEWLLQQAEP SVIAATGTGT 180 IPANFTSLNI SLRSSGSSMS LPSHFRSAAS TFSPNNIFPP AMLQQQQQQR GGGGGFLHHP 240 HLQGRATTSS LFPGIDNFTP TTSFLNFHNQ TKQEGDQDSD ELSSEKKRRL QTTSDLQLQQ 300 QHQHDQIGSY TLQSSNSGST ATAAAAAAAQ QIPGNFWMVA AAAAAAGGGG NNQTGGLMTA 360 SIGGSGGGEP VWTFPSINTA AAALYRSGVS GVSGGAVSSG LHFMNFAAPM AFLTGQQQQQ 420 QQLATTSNHE INEDNNNNNN NNNEGGGRSD GGGGDHHSTQ RHHHHQQQQQ QHHHHNILSG 480 LNQYGRQVSG ESQASGSLGG GDEEDPQD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 445 | 453 | GGRSDGGGG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:22155632, ECO:0000269|PubMed:22267487, ECO:0000269|PubMed:24689742, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:25757472, ECO:0000269|PubMed:28132837}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00396 | DAP | Transfer from AT3G47620 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa04g030560.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269|PubMed:17953649}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL132955 | 0.0 | AL132955.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F1P2. | |||
GenBank | AY058874 | 0.0 | AY058874.1 Arabidopsis thaliana AT3g47620/F1P2_170 mRNA, complete cds. | |||
GenBank | AY103304 | 0.0 | AY103304.1 Arabidopsis thaliana AT3g47620/F1P2_170 mRNA, complete cds. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010503367.1 | 0.0 | PREDICTED: transcription factor TCP14-like | ||||
Swissprot | Q93Z00 | 0.0 | TCP14_ARATH; Transcription factor TCP14 | ||||
TrEMBL | A0A1J3D566 | 0.0 | A0A1J3D566_NOCCA; Transcription factor TCP14 (Fragment) | ||||
STRING | XP_010503367.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3915 | 27 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47620.1 | 1e-156 | TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 |
Publications ? help Back to Top | |||
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