PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa04g030380.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Dof

Protein Properties

Length: 459aa MW: 51013.6 Da PI: 7.9264

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa04g030380.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.7	1.4e-39	113	173	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCkaC+ryWt+GG++rnvPvG+grrknk+ss Csa04g030380.1 113 PTKILPCPRCKSMETKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKSSS 173 67899*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-31	110	170	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.6E-32	115	171	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.556	117	171	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	119	155	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence Send to blast
MMMESRDPAI KLFGTKIPFP AVVQLPVTVD EEEEEDDWSG GDGGEDKSVY NKVTPELSDN 60 KKNKNCNDRS LNSSNESKPE TGDKEEETST DQIENSDSPE EQTTADGKTL KKPTKILPCP 120 RCKSMETKFC YYNNYNINQP RHFCKACQRY WTAGGTMRNV PVGAGRRKNK SSSSSHYRHI 180 TITEALEATR LDPGLQANTR VLSFGLDARQ QHAAPMTPVM KLQGNQKVLN GAQNGFHGVP 240 DQRLVARRVE NGDDCSSGSS VTTSNNHSVD ESRAQSCRVV EPQMNNNNNN SMNGYACIPG 300 VPWPYTWNPA MPPPGFYPPP GYPMPFYPYW TIPMLSPHQT SSPMSQKGSN TNSPTLGKHP 360 RDEESARLDN ETERKQRNGC VLVPKTLRID DPNEAAKSSI WTTLGIKNER MSKGGGMFEG 420 FDHKAKMNKN NDNKVENSPV RSANPAALSR SHNFHERN*

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence Send to blast

MMMESRDPAI KLFGTKIPFP AVVQLPVTVD EEEEEDDWSG GDGGEDKSVY NKVTPELSDN  60
KKNKNCNDRS LNSSNESKPE TGDKEEETST DQIENSDSPE EQTTADGKTL KKPTKILPCP  120
RCKSMETKFC YYNNYNINQP RHFCKACQRY WTAGGTMRNV PVGAGRRKNK SSSSSHYRHI  180
TITEALEATR LDPGLQANTR VLSFGLDARQ QHAAPMTPVM KLQGNQKVLN GAQNGFHGVP  240
DQRLVARRVE NGDDCSSGSS VTTSNNHSVD ESRAQSCRVV EPQMNNNNNN SMNGYACIPG  300
VPWPYTWNPA MPPPGFYPPP GYPMPFYPYW TIPMLSPHQT SSPMSQKGSN TNSPTLGKHP  360
RDEESARLDN ETERKQRNGC VLVPKTLRID DPNEAAKSSI WTTLGIKNER MSKGGGMFEG  420
FDHKAKMNKN NDNKVENSPV RSANPAALSR SHNFHERN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00394	DAP	Transfer from AT3G47500	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa04g030380.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL132955	0.0	AL132955.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F1P2.
GenBank	AY065152	0.0	AY065152.1 Arabidopsis thaliana H-protein promoter binding factor-2a (At3g47500; F1P2.50) mRNA, complete cds.
GenBank	AY128757	0.0	AY128757.1 Arabidopsis thaliana H-protein promoter binding factor-2a (At3g47500) mRNA, complete cds.
GenBank	CP002686	0.0	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010503351.1	0.0	PREDICTED: cyclic dof factor 3-like
Swissprot	Q8LFV3	0.0	CDF3_ARATH; Cyclic dof factor 3
TrEMBL	R0HJB1	0.0	R0HJB1_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_010503351.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5441	28	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	0.0	cycling DOF factor 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Corrales AR, et al. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] Renau-Morata B, et al. Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions. Front Plant Sci, 2017. 8: p. 660 [PMID:28515731] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689]