PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g026020.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GATA
Protein Properties Length: 204aa    MW: 23245.1 Da    PI: 9.519
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g026020.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.25.4e-19132165134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C++Cgt +Tp+WR+gp+g++tLCnaCG++yr  +
  Csa04g026020.1 132 CTHCGTRNTPMWREGPRGPRTLCNACGVRYRTGR 165
                     *******************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.532126162IPR000679Zinc finger, GATA-type
SMARTSM004018.9E-16126176IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.66E-15129188No hitNo description
Gene3DG3DSA:3.30.50.102.8E-15130164IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.50E-17131180No hitNo description
PfamPF003207.2E-17132165IPR000679Zinc finger, GATA-type
PROSITE patternPS003440132157IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MSRKDVVVHE EEEDLGTAMQ KMTIPLAELN QLPNDSVYNF VDGVRKIIED PNLLFEDSRE  60
FGNLHQDDKS VEDSKDSKQF ENSTKPPTAS RGRFSVPPKR SRNKRGRPKG QCLKSSATVV  120
DSNFVDITDK SCTHCGTRNT PMWREGPRGP RTLCNACGVR YRTGRLYPEY RPASSPEFKP  180
NVHSNFHRKV MEIRRERHSP PTQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199104RSRNKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00391DAPTransfer from AT3G45170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g026020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010503167.11e-151PREDICTED: GATA transcription factor 14-like
SwissprotQ9M1U25e-78GAT14_ARATH; GATA transcription factor 14
TrEMBLR0HP942e-88R0HP94_9BRAS; Uncharacterized protein
STRINGXP_010503167.11e-151(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM163681113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45170.12e-76GATA transcription factor 14