PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa04g026010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | TCP | ||||||||
Protein Properties | Length: 195aa MW: 21926.4 Da PI: 5.5162 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 90.1 | 4.9e-28 | 8 | 153 | 5 | 102 |
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................................. 65 +++ +++h kvggRdRR+Rl+ ++a ++F L++eLGf +d++t+ WLl++a+pai ++tg Csa04g026010.1 8 TRTPKDRHLKVGGRDRRIRLPPSIAPKLFSLTEELGFQSDGETVGWLLRNAEPAIFAATGHgvstttndvihssdkifhnyysncgnfsniingn 102 56789********************************************************7766555555544444444444444444444444 PP TCP 66 ssssaseceaesssssasnsssg...................................kaaksaakskksqk 102 + + + k++ + +sq+ Csa04g026010.1 103 C---------------------SytidgdnwtgintfhhemvfpettmkehaasstfpVKDKEDVSDMSSQT 153 0.....................04444444444444443333343322222222222222222222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.1E-24 | 11 | 142 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 24.013 | 11 | 65 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MDNMEKATRT PKDRHLKVGG RDRRIRLPPS IAPKLFSLTE ELGFQSDGET VGWLLRNAEP 60 AIFAATGHGV STTTNDVIHS SDKIFHNYYS NCGNFSNIIN GNCSYTIDGD NWTGINTFHH 120 EMVFPETTMK EHAASSTFPV KDKEDVSDMS SQTQPAMLPP LMHHQQQQEQ EPQPQFELGK 180 VEMAADEKRY VWSE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required during early processes in pollen development. {ECO:0000269|PubMed:16786299}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa04g026010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010503166.1 | 1e-147 | PREDICTED: transcription factor TCP16-like | ||||
Swissprot | Q9M1U4 | 1e-47 | TCP16_ARATH; Transcription factor TCP16 | ||||
TrEMBL | D7LNL8 | 2e-62 | D7LNL8_ARALL; Uncharacterized protein | ||||
STRING | XP_010503166.1 | 1e-147 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15750 | 10 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G45150.1 | 2e-50 | TCP domain protein 16 |
Publications ? help Back to Top | |||
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