PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa04g024130.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 242aa MW: 27180.6 Da PI: 9.5635

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa04g024130.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	131.4	6.6e-41	6	136	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +GfrF Pt+eel+++yL+ +++g + ++++ i+ +d+++veP +Lp+ +++++ ++w fF++r++++a+g r++r+t+sgyWkatg+ +v Csa04g024130.1 6 RVGFRFYPTEEELLTFYLRIQLSGGNATIHSLIPILDVFSVEPTQLPNlageRCRGDAEQWLFFVPRQEREARGGRPSRTTRSGYWKATGSPGPV 100 68*************************999**********9656766667888******************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +s +++++g+kkt+vfy+g+ap+g+kt+W m+ey++ Csa04g024130.1 101 FSPDNRVIGVKKTMVFYTGKAPTGRKTKWKMNEYKA 136 ********************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.4E-44	4	161	IPR003441	NAC domain
PROSITE profile	PS51005	46.855	5	161	IPR003441	NAC domain
Pfam	PF02365	1.3E-20	7	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MGEELRVGFR FYPTEEELLT FYLRIQLSGG NATIHSLIPI LDVFSVEPTQ LPNLAGERCR 60 GDAEQWLFFV PRQEREARGG RPSRTTRSGY WKATGSPGPV FSPDNRVIGV KKTMVFYTGK 120 APTGRKTKWK MNEYKAVDET ASESTNPKLR NEFSICRIYI KSGSSRAFDR RPTEAYGIER 180 KVPSNRVETS SRVTISTSPE TSHSGGNNVD LPVNATTINT QSISEMVDGL SLPFWEWEQM 240 K*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-33	8	166	20	170	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-33	8	166	20	170	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-33	8	166	20	170	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-33	8	166	20	170	NO APICAL MERISTEM PROTEIN
3swm_A	3e-33	8	166	23	173	NAC domain-containing protein 19
3swm_B	3e-33	8	166	23	173	NAC domain-containing protein 19
3swm_C	3e-33	8	166	23	173	NAC domain-containing protein 19
3swm_D	3e-33	8	166	23	173	NAC domain-containing protein 19
3swp_A	3e-33	8	166	23	173	NAC domain-containing protein 19
3swp_B	3e-33	8	166	23	173	NAC domain-containing protein 19
3swp_C	3e-33	8	166	23	173	NAC domain-containing protein 19
3swp_D	3e-33	8	166	23	173	NAC domain-containing protein 19
4dul_A	2e-33	8	166	20	170	NAC domain-containing protein 19
4dul_B	2e-33	8	166	20	170	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa04g024130.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL138641	1e-108	AL138641.2 Arabidopsis thaliana DNA chromosome 3, BAC clone T22K7.
GenBank	CP002686	1e-108	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010503090.1	1e-179	PREDICTED: putative NAC domain-containing protein 61
Swissprot	Q9M290	1e-144	NAC61_ARATH; Putative NAC domain-containing protein 61
TrEMBL	B3H506	1e-155	B3H506_ARATH; NAC domain containing protein 61
STRING	XP_010503090.1	1e-178	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1445	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44350.2	1e-150	NAC domain containing protein 61