PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g023980.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 268aa    MW: 30653.1 Da    PI: 7.0317
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g023980.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.94e-49601861128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     + pGf+F+Ptd el+++yLk+k++g + ++ e+i+evdiy++ePwdLp k++ ++++ew+fF+ r kky++g++++ratk gyWkatgk+++v+s
  Csa04g023980.1  60 MFPGFKFSPTDIELISYYLKRKMDGLERSV-EIIPEVDIYNFEPWDLPdKSIVKSDSEWFFFCARGKKYPHGSQNRRATKMGYWKATGKERNVKS 153
                     579************************999.89***************778888899************************************** PP

             NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++e++g+k+tLvf+ grapkg +t+W+mhey +
  Csa04g023980.1 154 -GSEVIGTKRTLVFHIGRAPKGGRTEWIMHEYCM 186
                     .9******************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-5355201IPR003441NAC domain
PROSITE profilePS5100551.59160202IPR003441NAC domain
PfamPF023657.3E-2562185IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
CIVFFTSLVP IPETFFFLFF FLFVTPQFLR SQREKSFDLF LPLSFSYMAA APVEPAVTTM  60
FPGFKFSPTD IELISYYLKR KMDGLERSVE IIPEVDIYNF EPWDLPDKSI VKSDSEWFFF  120
CARGKKYPHG SQNRRATKMG YWKATGKERN VKSGSEVIGT KRTLVFHIGR APKGGRTEWI  180
MHEYCMIGVS LDGLVICRLR KNTEFQGATI QKSPQPSILP DKHHVDTNNA ISESISGWEN  240
MVDFYLSSES GQELLSEIAE SSQSSQNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-43462022165NO APICAL MERISTEM PROTEIN
1ut4_B3e-43462022165NO APICAL MERISTEM PROTEIN
1ut7_A3e-43462022165NO APICAL MERISTEM PROTEIN
1ut7_B3e-43462022165NO APICAL MERISTEM PROTEIN
4dul_A3e-43462022165NAC domain-containing protein 19
4dul_B3e-43462022165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcription factor involved in modulation of abscisic acid (ABA) signaling. Attenuates ABA sensitivity and glucose-induced ABA accumulation. Reduces the expression of ABI4 gene. {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:24625790}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g023980.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By glucose (PubMed:24625790). Induced by salt, drought stress and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:24625790}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529510.0AK352951.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-C18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010514768.11e-167PREDICTED: NAC domain-containing protein 60
SwissprotQ9LXL91e-148NAC60_ARATH; NAC domain-containing protein 60
TrEMBLR0HPC61e-151R0HPC6_9BRAS; Uncharacterized protein
STRINGXP_010514768.11e-166(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43092356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44290.11e-140NAC domain containing protein 60
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]