PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa04g022640.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 270aa MW: 30785.5 Da PI: 9.4593 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 33.2 | 6.5e-11 | 20 | 58 | 5 | 43 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 k + +v +skRr++++ KA L+ L ++++a+ + s+ Csa04g022640.1 20 TKQQHSVAYSKRRQTLFSKAADLCLLSGTNIAIFVTSPA 58 578899*****************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 12.292 | 8 | 56 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.1E-14 | 8 | 67 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.28E-19 | 9 | 92 | No hit | No description |
SuperFamily | SSF55455 | 2.62E-15 | 10 | 101 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-8 | 21 | 61 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MPAMKRGGTK RKIEIKKRDT KQQHSVAYSK RRQTLFSKAA DLCLLSGTNI AIFVTSPAEN 60 SDVVYSFSDY SPASEIVDCY LNGKSPPKIT NPQTKLGFWW EDPDLYRYCD DLCELKMIED 120 CMMRAKKHLM DCLDQKEFHN LFPVMIKTLA PLLLSKKTQS PRLQNNRTVL SPPSRRSVAH 180 KLLVTIKTLV SGLLKIYISM ASRHHYSMFN QKHSNGVSLI QETKSTITNI EEDQSLWENL 240 YNVFCLNNDD NNINLEVPLS DNSSTKKKS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa04g022640.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010412491.1 | 1e-109 | PREDICTED: agamous-like MADS-box protein AGL97 | ||||
TrEMBL | D7LME1 | 1e-80 | D7LME1_ARALL; Uncharacterized protein | ||||
STRING | XP_010412491.1 | 1e-109 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6395 | 14 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G48150.1 | 1e-76 | M-type_MADS family protein |