PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g022500.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 309aa    MW: 35331.4 Da    PI: 4.54
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g022500.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF29.68.9e-101857443
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    + k +r+v   kRr++++ KA  L+ L +a++av + s+ 
  Csa04g022500.1 18 DTKQQRSVACRKRRQTLFSKAADLCLLSGANIAVFVTSPA 57
                    56889*******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006612.194755IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-16766IPR002100Transcription factor, MADS-box
CDDcd002662.06E-22891No hitNo description
SuperFamilySSF554551.44E-159100IPR002100Transcription factor, MADS-box
PfamPF003191.8E-92060IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MTMKRGGTKR KIEIKKRDTK QQRSVACRKR RQTLFSKAAD LCLLSGANIA VFVTSPAENS  60
DVVYSFSGYS PASEIADCYL NGKSPPKITN PQTKLGFWWE DPDLYRNCDD LCELKMIEDR  120
MMRTKKHLMY CLEKKENSQF VSNSDHNPSS SASLDENPKS SSPEQKNCTF SSLEKICGAQ  180
VTCYDQNPSF RPIEDLYIDG ESASLYDQSC YLVNEDDVGF VDSLWEKEKQ RNRVSRLFQE  240
TQSTITNGED QSLWENLYNV FCLNNDDNNI KLEVPLSDHS SIDEEEELMI DISEFINKEE  300
IELPQVFS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11430KKRDTKQQRSVACRKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g022500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010412491.10.0PREDICTED: agamous-like MADS-box protein AGL97
TrEMBLD7LME11e-117D7LME1_ARALL; Uncharacterized protein
STRINGXP_010507155.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63951442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48150.11e-107M-type_MADS family protein