PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g019970.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 276aa    MW: 31482 Da    PI: 8.316
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g019970.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding64.91.5e-202976148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd+ll+++v+ +G g+W+t+a++ g++R++k+c++rw +yl
   Csa04g019970.1 29 KGPWTLEEDKLLAEYVTTHGEGRWSTVAKCAGLNRSGKSCRLRWVNYL 76
                     79********************************************97 PP

2Myb_DNA-binding507.1e-1682126147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T++E+ ++++++ ++G++ W+tIar+++ gRt++++k++w+++
   Csa04g019970.1  82 RGQITPQEEGIILELHSLWGNK-WSTIARYLP-GRTDNEIKNYWRTH 126
                      7888******************.*********.************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.6192476IPR017930Myb domain
SuperFamilySSF466895.62E-3226123IPR009057Homeodomain-like
SMARTSM007172.0E-162878IPR001005SANT/Myb domain
PfamPF002492.1E-182976IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-243083IPR009057Homeodomain-like
CDDcd001672.09E-123176No hitNo description
PROSITE profilePS5129424.15977131IPR017930Myb domain
SMARTSM007171.8E-1381129IPR001005SANT/Myb domain
PfamPF002491.0E-1382126IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2384130IPR009057Homeodomain-like
CDDcd001676.69E-1086126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MLDWGVQGHH QKHDHDPYQQ QQQQQGCRKG PWTLEEDKLL AEYVTTHGEG RWSTVAKCAG  60
LNRSGKSCRL RWVNYLRPGL KRGQITPQEE GIILELHSLW GNKWSTIARY LPGRTDNEIK  120
NYWRTHYKKK EKSSSKQEKV KRSRSRKKEV ELKPQPQPQP QSHPFQPVSR DHMNLGNEQN  180
IASSLYYPTS VFNDQFSMPQ SVAATSSDHS MIDESHLWGN LWNLNDDDLH GFGDGSGQRI  240
PADLSEKFPD GGIEAPSCGS GDYSYTGFYM GGYIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25291307107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140145KRSRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g019970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3719800.0AF371980.2 Arabidopsis thaliana putative transcription factor MYB121 (MYB121) mRNA, complete cds.
GenBankAY5195930.0AY519593.1 Arabidopsis thaliana MYB transcription factor (At3g30210) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010502997.10.0PREDICTED: transcription factor WER-like
TrEMBLA0A178VB631e-169A0A178VB63_ARATH; MYB121
STRINGXP_010502997.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.11e-150myb domain protein 121