PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa04g019970.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB | ||||||||
Protein Properties | Length: 276aa MW: 31482 Da PI: 8.316 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 64.9 | 1.5e-20 | 29 | 76 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd+ll+++v+ +G g+W+t+a++ g++R++k+c++rw +yl Csa04g019970.1 29 KGPWTLEEDKLLAEYVTTHGEGRWSTVAKCAGLNRSGKSCRLRWVNYL 76 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50 | 7.1e-16 | 82 | 126 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T++E+ ++++++ ++G++ W+tIar+++ gRt++++k++w+++ Csa04g019970.1 82 RGQITPQEEGIILELHSLWGNK-WSTIARYLP-GRTDNEIKNYWRTH 126 7888******************.*********.************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.619 | 24 | 76 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.62E-32 | 26 | 123 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-16 | 28 | 78 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-18 | 29 | 76 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-24 | 30 | 83 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.09E-12 | 31 | 76 | No hit | No description |
PROSITE profile | PS51294 | 24.159 | 77 | 131 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-13 | 81 | 129 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-13 | 82 | 126 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-23 | 84 | 130 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.69E-10 | 86 | 126 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MLDWGVQGHH QKHDHDPYQQ QQQQQGCRKG PWTLEEDKLL AEYVTTHGEG RWSTVAKCAG 60 LNRSGKSCRL RWVNYLRPGL KRGQITPQEE GIILELHSLW GNKWSTIARY LPGRTDNEIK 120 NYWRTHYKKK EKSSSKQEKV KRSRSRKKEV ELKPQPQPQP QSHPFQPVSR DHMNLGNEQN 180 IASSLYYPTS VFNDQFSMPQ SVAATSSDHS MIDESHLWGN LWNLNDDDLH GFGDGSGQRI 240 PADLSEKFPD GGIEAPSCGS GDYSYTGFYM GGYIF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-25 | 29 | 130 | 7 | 107 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 140 | 145 | KRSRSR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa04g019970.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF371980 | 0.0 | AF371980.2 Arabidopsis thaliana putative transcription factor MYB121 (MYB121) mRNA, complete cds. | |||
GenBank | AY519593 | 0.0 | AY519593.1 Arabidopsis thaliana MYB transcription factor (At3g30210) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010502997.1 | 0.0 | PREDICTED: transcription factor WER-like | ||||
TrEMBL | A0A178VB63 | 1e-169 | A0A178VB63_ARATH; MYB121 | ||||
STRING | XP_010502997.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G30210.1 | 1e-150 | myb domain protein 121 |