PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa04g018350.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 323aa MW: 36512.4 Da PI: 7.1469

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa04g018350.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.4	1.9e-55	25	151	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrF+Ptdeel+++yL++kv ++ +++ +i evd++kvePwdLp k+k +ekewyfF+ +d+ky+tg r+nratk+gyWkatgkdke+++ Csa04g018350.1 25 LPPGFRFQPTDEELITYYLRPKVLDTFFSA-IAIGEVDLNKVEPWDLPWKAKIGEKEWYFFCVNDRKYPTGLRTNRATKAGYWKATGKDKEIFK- 117 79***********************999.88***********98999*************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 +++lvg+kktLvfykgrapkg+kt+Wvmheyrle Csa04g018350.1 118 GKSLVGMKKTLVFYKGRAPKGVKTNWVMHEYRLE 151 999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.76E-60	22	176	IPR003441	NAC domain
PROSITE profile	PS51005	57.136	25	176	IPR003441	NAC domain
Pfam	PF02365	1.9E-29	26	150	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MDYKVSRIGE IVKGEEVEDS EKIDLPPGFR FQPTDEELIT YYLRPKVLDT FFSAIAIGEV 60 DLNKVEPWDL PWKAKIGEKE WYFFCVNDRK YPTGLRTNRA TKAGYWKATG KDKEIFKGKS 120 LVGMKKTLVF YKGRAPKGVK TNWVMHEYRL EGEHDAMDNL PKTAKNEFVI SRVFQKRADG 180 TKVHISGLRM FGSGVNKFEP GGLPQLMDSS PYLKSRGRDS LAGTYDDKSL VDELKDNSKA 240 TRFGSTSTNL MPNIVSMLDY DHLSLQDDSS MLKMLLDSEE TQFKKNLENS GSLESELTAS 300 SWHGHSPSCS TGPVNLDNVW NF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-49	15	182	7	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-49	15	182	7	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-49	15	182	7	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-49	15	182	7	171	NO APICAL MERISTEM PROTEIN
4dul_A	1e-49	15	182	7	171	NAC domain-containing protein 19
4dul_B	1e-49	15	182	7	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to DNA in promoters of target genes on a specific bipartite motif 5'-[AG]CGT[AG](4-5n)[AG][CT]ACGCAA-3' (PubMed:16359384, PubMed:21303842). Triggers the expression of senescence-associated genes during age-, salt- and dark-induced senescence through a regulatory network that may involve cross-talk with salt- and H(2)O(2)-dependent signaling pathways (PubMed:21303842). {ECO:0000269\|PubMed:16359384, ECO:0000269\|PubMed:21303842}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa04g018350.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Rapidly and strongly induced by H(2)O(2) treatment in both leaves and roots. Accumulates during senescence and in response to wounding. {ECO:0000269\|PubMed:21303842}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010502913.1	0.0	PREDICTED: NAC domain-containing protein 59
Swissprot	Q9LJW3	1e-172	NAC59_ARATH; NAC domain-containing protein 59
TrEMBL	D7LM77	0.0	D7LM77_ARALL; ANAC059/ATNAC3
STRING	XP_010502913.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM400	28	174

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G29035.1	1e-174	NAC domain containing protein 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Manacorda CA, et al. Salicylic acid determines differential senescence produced by two Turnip mosaic virus strains involving reactive oxygen species and early transcriptomic changes. Mol. Plant Microbe Interact., 2013. 26(12): p. 1486-98 [PMID:23945002] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]