PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g018320.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 306aa    MW: 34844.2 Da    PI: 9.5092
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g018320.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.31e-1465110147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W   Ed +l ++v+  G+ +W+ Ia+ m+ gRt+k+c++rw++ 
   Csa04g018320.1  65 RGHWRISEDTQLMELVAVNGPQNWNHIAENMQ-GRTGKSCRLRWFNQ 110
                      789999**************************.***********996 PP
2Myb_DNA-binding47.54.2e-15118161247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +++ eE+e+l+ a++ +G++ W+ Ia+ +  gRt++ +k++w+ +
   Csa04g018320.1 118 RAFSVEEEERLLAAHRAFGNK-WAMIAKLFT-GRTDNALKNHWHVL 161
                      689******************.********9.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.20960111IPR017930Myb domain
SMARTSM007173.5E-1064113IPR001005SANT/Myb domain
PfamPF002492.2E-1465110IPR001005SANT/Myb domain
SuperFamilySSF466893.03E-2665158IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.3E-2366118IPR009057Homeodomain-like
CDDcd001671.68E-968109No hitNo description
PROSITE profilePS5129424.539112166IPR017930Myb domain
SMARTSM007171.3E-12116164IPR001005SANT/Myb domain
PfamPF002491.4E-11118161IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-19119166IPR009057Homeodomain-like
CDDcd001675.87E-9119162No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MDFSCFQEYP FGLKFRGTFN GFGENNAVSE SVVEELCNKG RMQKKSDDDL KKKKKKQSGS  60
RVCSRGHWRI SEDTQLMELV AVNGPQNWNH IAENMQGRTG KSCRLRWFNQ LDPRINKRAF  120
SVEEEERLLA AHRAFGNKWA MIAKLFTGRT DNALKNHWHV LMARKMRQQS SSYVQRFNGS  180
THKPNTDHKI FNLSPGNVDD EDINLKKYSW EMLKEGTTNL KAQYLQEEYC SSRMPMQGPH  240
HHYSTFPADS LALTLHVSIQ EPSSSSSSSS SLSLPSSSTA EHTMVTRYIE TTKPPAFIDF  300
LGVGH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-29651664105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g018320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2727320.0AF272732.1 Arabidopsis thaliana putative transcription factor (MYB110) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010502910.10.0PREDICTED: transcription factor MYB35 isoform X1
TrEMBLR0FTE60.0R0FTE6_9BRAS; Uncharacterized protein
STRINGXP_010502910.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63001846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29020.21e-173myb domain protein 110