PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa04g016680.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB | ||||||||
Protein Properties | Length: 326aa MW: 36333.4 Da PI: 7.023 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.4 | 3.4e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +++ +v+ +G g+W++I+++ g++R++k+c++rw +yl Csa04g016680.1 14 KGLWTEEEDAKILAYVAIHGVGNWSLIPKKAGLNRCGKSCRLRWTNYL 61 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.1 | 3e-16 | 69 | 110 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++++E+el++++++ G++ W++Iar+++ gRt++++k++w++ Csa04g016680.1 69 SFSPQEEELIIQCHRVIGSR-WSSIARKLP-GRTDNDVKNHWNT 110 79******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 27.917 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.32E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-16 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.07E-13 | 17 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-23 | 65 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.657 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.55E-11 | 69 | 110 | No hit | No description |
Pfam | PF00249 | 3.2E-14 | 69 | 110 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MGMPPCCDKS NVKKGLWTEE EDAKILAYVA IHGVGNWSLI PKKAGLNRCG KSCRLRWTNY 60 LRPDLKHDSF SPQEEELIIQ CHRVIGSRWS SIARKLPGRT DNDVKNHWNT KLKKKLMKMG 120 IDPVTHKPVS QVVLEFRNIS GHGHENASFK TEPSNNSILT QSNSSAWEIM GNTTMSHETY 180 YNNSPMIFTN PASSEFQTSP FHFYNHSNHL LNGTTSSCSS SSSSASITQP NQGATNFCWN 240 DYLLSDPVLP QNSQTQVLGS SATSNLTFAQ NELHFNSLAE SSAHNNIDTN ASRTSHSASS 300 FVDEILDKDQ EMLSQFPPLL NDFDY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-30 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for anther development and early tapetal function during microspore maturation (PubMed:18397379, PubMed:21957980). Regulates callose dissolution required for microspores release from the tetrads (PubMed:18397379). {ECO:0000269|PubMed:18397379, ECO:0000269|PubMed:21957980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa04g016680.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY519591 | 0.0 | AY519591.1 Arabidopsis thaliana MYB transcription factor (At3g28470) mRNA, complete cds. | |||
GenBank | DQ446711 | 0.0 | DQ446711.1 Arabidopsis thaliana clone pENTR221-At3g28470 myb family transcription factor (At3g28470) mRNA, complete cds. | |||
GenBank | DQ653114 | 0.0 | DQ653114.1 Arabidopsis thaliana clone 0000017443_0000012156 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010502849.1 | 0.0 | PREDICTED: transcription factor MYB35-like isoform X2 | ||||
Swissprot | Q9LSI7 | 1e-177 | MYB35_ARATH; Transcription factor MYB35 | ||||
TrEMBL | R0FQI4 | 0.0 | R0FQI4_9BRAS; Uncharacterized protein | ||||
STRING | XP_010502848.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28470.1 | 1e-178 | MYB family protein |
Publications ? help Back to Top | |||
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