PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa04g009900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | RAV | ||||||||
Protein Properties | Length: 353aa MW: 39352.4 Da PI: 9.897 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 42.5 | 1.6e-13 | 62 | 110 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW A+I++ ++r++lg+f +eeAa+a++ a+ +++g Csa04g009900.1 62 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAARAYDVAAHRFRG 110 689***9788.8*********3.....5************************998 PP | |||||||
2 | B3 | 99.2 | 2.6e-31 | 193 | 302 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+k+ tpsdv+k++rlv+pk+ ae+h g + +++ l++ed +g++W+++++y+++s++yvltkGW++Fvk+++L++gD + F Csa04g009900.1 193 FEKTVTPSDVGKLNRLVIPKHQAEKHfplalggvdndnnG--SVKGMLLSFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKRLCAGDLICF 285 99*****************************999888533..34899************************************************ PP EE-SSSEE..EEEEE-S CS B3 83 kldgrsefelvvkvfrk 99 ++++ ++ +l++++ +k Csa04g009900.1 286 RRSNGQDDKLFIGWKSK 302 *9877999999999776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.9E-9 | 62 | 110 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.46E-26 | 62 | 120 | No hit | No description |
SuperFamily | SSF54171 | 1.57E-17 | 62 | 118 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.3E-21 | 63 | 119 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.389 | 63 | 118 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-29 | 63 | 124 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 2.1E-38 | 187 | 306 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.62E-30 | 189 | 302 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.82E-26 | 192 | 290 | No hit | No description |
Pfam | PF02362 | 1.3E-27 | 193 | 302 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.5E-25 | 193 | 303 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.451 | 193 | 303 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MDTMSSGDES STTTDSIHTP IKIPARKSPS PAGLLYRMGS GTSVVLDSDN GLEAESRKLP 60 SSRFKGVVPQ PNGRWGAQIY EKHQRVWLGT FNEEEEAARA YDVAAHRFRG RDAVTNFKET 120 TLVNGNDGGD EDEVDFLNAH SKSEIVDMLR KHTYKEELEQ RKRKRNGNGN KTMGFGSVTA 180 AVITGFKTSK LLFEKTVTPS DVGKLNRLVI PKHQAEKHFP LALGGVDNDN NGSVKGMLLS 240 FEDVNGKVWR FRYSYWNSSQ SYVLTKGWSR FVKEKRLCAG DLICFRRSNG QDDKLFIGWK 300 SKSGSESVSG SDRVVRLFGV DICFNDAAVA VKKEENDMFV SLRCNKKKQR AM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 2e-58 | 192 | 306 | 13 | 121 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00031 | PBM | Transfer from AT3G25730 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa04g009900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010502448.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor ARF14-like | ||||
Swissprot | Q9LS06 | 0.0 | RAVL4_ARATH; AP2/ERF and B3 domain-containing transcription factor ARF14 | ||||
TrEMBL | D7LQT8 | 0.0 | D7LQT8_ARALL; Uncharacterized protein | ||||
STRING | XP_010502448.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM848 | 27 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G25730.1 | 1e-174 | ethylene response DNA binding factor 3 |