PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa04g009800.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 214aa MW: 24044.5 Da PI: 8.3602 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 29.8 | 7.5e-10 | 57 | 96 | 4 | 43 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 e k +r v skRr++++ KA L+ L +a++av + s++ Csa04g009800.2 57 ETKQQRAVACSKRRQTVFSKAADLCHLSGANIAVFVTSPS 96 77999********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 8.1E-16 | 46 | 105 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 12.32 | 46 | 96 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.03E-20 | 47 | 126 | No hit | No description |
SuperFamily | SSF55455 | 5.36E-16 | 48 | 133 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.4E-9 | 57 | 99 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006412 | Biological Process | translation | ||||
GO:0005840 | Cellular Component | ribosome | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003735 | Molecular Function | structural constituent of ribosome | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MLLSSFFQTS LSLRVFFLFA LYLFVSVGNI MPSSSTNASE STMKKGTKRK IEIKKRETKQ 60 QRAVACSKRR QTVFSKAADL CHLSGANIAV FVTSPSEITD VVYSFSGYSP AQEIADCYLN 120 RKPPPKIDVK AQSTKLGFWW EDPDLYNSCD DLSELNILED RIERVKKHVL ACLEKKEKSQ 180 PLVANNEQNP ITDEDCDRVS LEHVQQRGAL ISL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa04g009800.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019100054.1 | 1e-135 | PREDICTED: agamous-like MADS-box protein AGL97 | ||||
Refseq | XP_019100055.1 | 1e-135 | PREDICTED: agamous-like MADS-box protein AGL97 | ||||
Refseq | XP_019100056.1 | 1e-135 | PREDICTED: agamous-like MADS-box protein AGL97 | ||||
TrEMBL | R0HBN4 | 4e-85 | R0HBN4_9BRAS; Uncharacterized protein | ||||
STRING | XP_010425202.1 | 1e-127 | (Camelina sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G27130.1 | 2e-72 | AGAMOUS-like 39 |