PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g009070.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 283aa    MW: 31813.4 Da    PI: 8.4814
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g009070.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.72.7e-28230280151
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                     k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQ
  Csa04g009070.1 230 KARRCWSPDLHRRFVQALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQ 280
                     68************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.626227282IPR017930Myb domain
SuperFamilySSF466895.55E-13228280IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-23228280IPR009057Homeodomain-like
TIGRFAMsTIGR015579.4E-24230281IPR006447Myb domain, plants
PfamPF002497.2E-6232280IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MASSSELSLD CKPQSYSMLL KSFGDNFQSN QTTQKLEDLL SRLDQERLKI DAFKRELPLC  60
MQLLNNAVEV YKQQLEAYRA NSNNNNQSVP TRPVLEEFIP LRNQPEKPNI KGNNWMTTAQ  120
LWSESETKPK NIDSTADQSL HKDEIASSPK RGHFDAKQRN GNGAFLPFSK EHSLPELALS  180
TLVKRVSPTS EHTNGRDGND ESMINNDTNN NNNNSNNNGV SSTTSQSNRK ARRCWSPDLH  240
RRFVQALQML GGSQVATPKQ IRELMKVDGL TNDEVKSHLQ VT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g009070.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2216620.0AK221662.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL09-70-E23.
GenBankAY0605590.0AY060559.1 Arabidopsis thaliana At2g03500/T4M8.7 mRNA, complete cds.
GenBankAY1336300.0AY133630.1 Arabidopsis thaliana At2g03500/T4M8.7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010502362.10.0PREDICTED: myb family transcription factor EFM-like isoform X3
SwissprotQ9ZQ851e-177EFM_ARATH; Myb family transcription factor EFM
TrEMBLA0A1J3JCF51e-178A0A1J3JCF5_NOCCA; Putative Myb family transcription factor (Fragment)
STRINGXP_010502363.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71342843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.11e-170G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]