PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa04g008070.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

ZF-HD

Protein Properties

Length: 314aa MW: 35001.3 Da PI: 9.1742

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa04g008070.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	100.5	1.2e-31	87	142	4	60
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 ++YkeClkNhAas Gg+a+DGCgEfmps g++g+++al+C+AC+CHRnFHRreve e Csa04g008070.1 87 IKYKECLKNHAASKGGNAIDGCGEFMPS-GKDGSIEALTCSACNCHRNFHRREVEGE 142 79***********************9.999*******************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	2.0E-25	87	149	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.2E-28	87	139	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.4E-30	88	139	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.944	89	138	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	1.48E-20	210	283	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.3E-31	216	284	IPR009057	Homeodomain-like
PROSITE profile	PS50071	8.989	220	284	IPR001356	Homeobox domain
TIGRFAMs	TIGR01565	1.6E-26	222	278	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MEIASQEDPT PINTSYGNSG GGLGNLIHHH HANSAPTSLN ITTPNPLQVS SNGNGLGKNH 60 EYSHHHHVGY NIMVGNNNIK KEKPVVIKYK ECLKNHAASK GGNAIDGCGE FMPSGKDGSI 120 EALTCSACNC HRNFHRREVE GEEKTFFSPY LNHHQPPPPQ RKLMFHHKLI KSPLPEQMIM 180 PVGVATAGSN SESEDLMEEG GGRSLTFRHP PPPPYSYGHN QKKRFRTKFT QEQKEKMMSF 240 AERVGWKMQR QEESAVQQLC QEIGIRRRVL KVWMHNNKHH LSKKSNNIND NVDQLANKDV 300 NNATTENLAS ASP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	4e-23	223	279	18	74	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00258	DAP	Transfer from AT2G02540	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa04g008070.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC004136	0.0	AC004136.3 Arabidopsis thaliana chromosome 2 BAC T8K22 genomic sequence, complete sequence.
GenBank	AY091515	0.0	AY091515.1 Arabidopsis thaliana hypothetical protein At2g02540/T822.16 mRNA, complete cds.
GenBank	AY773834	0.0	AY773834.1 Arabidopsis thaliana clone pENTR221-At2g02540 hypothetical protein (At2g02540) mRNA, complete cds.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010502266.1	0.0	PREDICTED: zinc-finger homeodomain protein 3-like
Swissprot	O64722	1e-174	ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBL	R0FPG3	0.0	R0FPG3_9BRAS; Uncharacterized protein
STRING	XP_010502266.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3339	26	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02540.1	1e-164	homeobox protein 21

Publications ? help Back to Top
González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]